Escherichia coli LR-64-1 |
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Putative Escherichia coli LR-64-1 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,715,782 bp | AP027588 |
| plasmid pLR-64-1_1: | 112,229 bp | AP027589 |
| plasmid pLR-64-1_2: | 94,657 bp | AP027590 |
REBASE acronym: EcoLR641
Org_num: 72641
All begin VEE11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28650 | 290 aa hypothetical protein | |||
| 28660 | M | M.EcoTHO010ORF28970P (99% identity) | M.EcoLR641ORF28660P | |
| 28670 | S | S.Efe28C21ORF4805P (71% identity) | S1.EcoLR641ORF28660P | |
| 28680 | R | Eco28C20ORF6360P (99% identity) | EcoLR641ORF28660P | |
| ??? | S | S2.EcoLR46ORF1830P (100% identity) | S2.EcoLR641ORF28660P | |
| 28690 | IS5 family transposase | |||
| plasmid pLR-64-1_1 | ||||
| 45430 | 96 aa hypothetical protein | |||
| 45440 | R | EcoZ063ORF23860P (99% identity) | EcoLR641ORF45460P | |
| 45450 | S | S.EcoLR48ORF45070P (100% identity) | S.EcoLR641ORF45460P | |
| 45460 | M | M.SenceORFJP (99% identity) | M.EcoLR641ORF45460P | |
| 45470 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3440 | cell division protein DamX | |||
| 3450 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLR641DamP |
| 3460 | ribulose-phosphate 3-epimerase | |||
| 4610 | acrEF/envCD operon repressor | |||
| 4620 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoLR641ORF4620P |
| 4630 | DNA-binding protein Fis | |||
| 13380 | protein ninB | |||
| 13390 | M | M.Eco0386ORF7195P (100% identity) | GATC | M.EcoLR641ORF13390P |
| 13400 | 133 aa hypothetical protein | |||
| 17620 | 231 aa hypothetical protein | |||
| 17630 | M | M.EcoC0017DcmP (100% identity) | CCWGG | M.EcoLR641DcmP |
| 17640 | V | V.Ecos195DcmP (100% identity) | V.EcoLR641DcmP | |
| 17650 | multidrug transporter | |||
| 37830 | prophage lysis protein S homolog EssD | |||
| 37840 | M | M.Sso63633ORF22290P (100% identity) | M.EcoLR641ORF37840P | |
| 37850 | 67 aa hypothetical protein | |||
| 37910 | LexA family transcriptional regulator | |||
| 37920 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoLR641ORF37920P |
| 37930 | 162 aa hypothetical protein | |||
| plasmid pLR-64-1_2 | ||||
| 46170 | plasmid stability protein StbA | |||
| 46180 | M | M.EcoY18JORF350P (100% identity) | M.EcoLR641ORF46180P | |
| 46190 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLR-64-1_2 | ||||
| 45990 | 67 aa hypothetical protein | |||
| 46000 | M | M.SspS13ORF650P (100% identity) | M.EcoLR641ORF46000P | |
| 46010 | R | SspS13ORF650P (100% identity) | EcoLR641ORF46000P | |
| 46020 | IS30 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 38650 | repressor TnpA | |||
| 38660 | R | SflSTLE4McrCP (76% identity) | EcoLR641McrCP | |
| 38670 | restriction endonuclease | |||