Escherichia coli LR-21-1 |
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Putative Escherichia coli LR-21-1 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,891,018 bp | AP027487 |
| plasmid pLR-21-1_1: | 191,909 bp | AP027488 |
| plasmid pLR-21-1_3: | 94,146 bp | AP027490 |
REBASE acronym: EcoLR211
Org_num: 72624
All begin VEE05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39830 | 177 aa hypothetical protein | |||
| 39840 | M | M.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | M.EcoLR211ORF39840P |
| 39850 | S | S.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | S.EcoLR211ORF39840P |
| 39860 | R | SflSTLE3ORF19325P (99% identity) | AGCANNNNNNTGA | EcoLR211ORF39840P |
| 39870 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3200 | cell division protein DamX | |||
| 3210 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLR211DamP |
| 3220 | ribulose-phosphate 3-epimerase | |||
| 4380 | acrEF/envCD operon repressor | |||
| 4390 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoLR211ORF4390P |
| 4400 | DNA-binding protein Fis | |||
| 18310 | 231 aa hypothetical protein | |||
| 18320 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoLR211DcmP |
| 18330 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoLR211DcmP |
| 18340 | multidrug transporter | |||
| 22390 | 140 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoLR211ORF22400P | |
| 22410 | transposase | |||
| 30450 | replication endonuclease from | |||
| 30460 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoLR211ORF30460P |
| 30470 | 100 aa hypothetical protein | |||
| 35860 | 449 aa hypothetical protein | |||
| 35870 | R | EcoTZ118ORF22710P (99% identity) | CCWGG | EcoLR211ORF35880P |
| 35880 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoLR211ORF35880P |
| 35890 | tail assembly protein | |||
| 36170 | LexA family transcriptional regulator | |||
| 36180 | M | M.Eco34C08ORF17565P (99% identity) | GATC | M.EcoLR211ORF36180P |
| 36190 | 57 aa hypothetical protein | |||
| plasmid pLR-21-1_1 | ||||
| 46860 | nuclease | |||
| 46870 | M | M.StyCORF187P (100% identity) | CCWGG | M.EcoLR211ORF46870P |
| 46880 | 55 aa hypothetical protein | |||
| 47820 | 273 aa hypothetical protein | |||
| 47830 | M | M.Ype21801ORF197P (100% identity) | M.EcoLR211ORF47830P | |
| 47840 | DNA-binding protein | |||
| plasmid pLR-21-1_3 | ||||
| 49930 | recombination-associated protein RdgC | |||
| 49940 | M | M.Eco1706ORF24875P (99% identity) | M.EcoLR211ORF49940P | |
| 49950 | 63 aa hypothetical protein | |||