Escherichia coli isolate F404 |
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Putative Escherichia coli isolate F404 RM systems
Ref: Leclercq,S. unpublished
REBASE ref # 37790
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,773,301 bp | OY754364 |
| plasmid pF404-1: | 126,554 bp | OY754365 |
| plasmid pF404-2: | 106,211 bp | OY754366 |
REBASE acronym: EcoF404
Org_num: 72682
All begin FGAF404_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 38960 | 322 aa hypothetical protein | |||
| 38970 | R | EcosLF82ORF3455P (100% identity) | TACNNNNNNNRTRTC | EcoF404ORF38980P |
| 38980 | M | M.Sbo192ORF9605P (100% identity) | TACNNNNNNNRTRTC | M.EcoF404ORF38980P |
| 38990 | S | S.EcoSTEC508ORF24455P (100% identity) | TACNNNNNNNRTRTC | S.EcoF404ORF38980P |
| 39000 | endoribonuclease SymE | |||
| plasmid pF404-1 | ||||
| 45780 | 73 aa hypothetical protein | |||
| 45790 | M | M.EcosS142ORF43560P (100% identity) | M.EcoF404ORF45790P | |
| 45800 | S | S1.Efe44C21ORF22625P (100% identity) | S.EcoF404ORF45790P | |
| 45810 | R | Efe44C21ORF22625P (100% identity) | EcoF404ORF45790P | |
| 45820 | NIF family HAD-type phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3670 | cell division protein DamX | |||
| 3680 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoF404DamP |
| 3690 | ribulose-phosphate 3-epimerase | |||
| 4880 | DUF2556 family protein | |||
| 4890 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoF404ORF4890P |
| 4900 | DNA-binding transcriptional regulator Fis | |||
| 17550 | phosphohydrolase | |||
| 17560 | M | M.EcosPA11DcmP (100% identity) | CCWGG | M.EcoF404DcmP |
| 17570 | V | V.Ecostr9DcmP (74% identity) | CCWGG | V.EcoF404DcmP |
| 17580 | drug/metabolite exporter YedA | |||
| 21520 | DUF977 family protein | |||
| ??? | M | M.Ecoi029ORF11125P (100% identity) | M.EcoF404ORF21530P | |
| 21540 | 59 aa hypothetical protein | |||
| 28780 | replication endonuclease | |||
| 28790 | M | M.EcoEC581ORF51570P (99% identity) | GATC | M.EcoF404ORF28790P |
| 28800 | TraR/DksA family transcriptional regulator | |||
| 32170 | DUF1317 domain-containing protein | |||
| 32180 | M | M.Sbo812ORFAP (99% identity) | M.EcoF404ORF32180P | |
| 32190 | 71 aa hypothetical protein | |||
| 38410 | LexA family transcriptional regulator | |||
| 38420 | M | M.Sso90ORF15820P (99% identity) | GATC | M.EcoF404ORF38420P |
| 38430 | PerC family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 39000 | endoribonuclease SymE | |||
| 39010 | R | EcoSTEC508GmrSDP (100% identity) | EcoF404GmrSDP | |
| 39020 | DUF1127 domain-containing protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pF404-2 | ||||
| 47140 | 76 aa hypothetical protein | |||
| 47150 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoF404ORF47150P |
| 47160 | 269 aa hypothetical protein | |||