Pseudomonas fragi EH-H1 |
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Putative Pseudomonas fragi EH-H1 RM systems
Ref: Wu,Q. et al. Bioresour Technol 365, 128156 (2022)
REBASE ref # 37828
| Sequence length: | GenBank #: | |
| Chromosome: | 5,331,725 bp | CP129917 |
| plasmid unnamed2: | 19,369 bp | CP129919 |
REBASE acronym: PfrEHH1
Org_num: 72875
All begin Q1A94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13545 | SHOCT domain-containing protein | |||
| 13550 | M | M.PsyUSA011ORF2940P (96% identity) | M.PfrEHH1ORF13550P | |
| 13555 | S | S.Psp2300ORF4100P (58% identity) | S.PfrEHH1ORF13550P | |
| 13560 | R | Pde9ORF1685P (95% identity) | PfrEHH1ORF13550P | |
| 13565 | 200 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 24760 | nucleotide-binding protein | |||
| 24765 | M | M.PflC2ORF10885P (93% identity) | M.PfrEHH1ORF24765P | |
| 24770 | S | S.PfrNMC25ORF23500P (63% identity) | S1.PfrEHH1ORF24765P | |
| 24775 | S | S2.PsytsORFGP (91% identity) | S2.PfrEHH1ORF24765P | |
| 24780 | R | PfrNMC25ORF23500P (99% identity) | PfrEHH1ORF24765P | |
| 24785 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2160 | DUF3800 domain-containing protein | |||
| ??? | R | Ppa2180ORF26475P (100% identity) | PfrEHH1ORF2165P | |
| 2170 | 250 aa hypothetical protein | |||
| 3295 | PDDEXK nuclease domain-containing protein | |||
| 3300 | R | Pae105777ORF1588P (89% identity) | PfrEHH1ORF3305P | |
| 3305 | M | M.Pae105777ORF1588P (89% identity) | M.PfrEHH1ORF3305P | |
| 3310 | helix-turn-helix domain-containing protein | |||
| 13565 | 200 aa hypothetical protein | |||
| 13570 | M | M.Pde1010ORF11430P (97% identity) | M.PfrEHH1ORF13570P | |
| 13575 | lysis system i-spanin subunit Rz | |||
| 14400 | 137 aa hypothetical protein | |||
| 14405 | M | M.Pfr3891ORF4852P (83% identity) | M.PfrEHH1ORF14405P | |
| 14410 | IS5 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15130 | 100 aa hypothetical protein | |||
| 15135 | R | PspPIaORF235P (92% identity) | PfrEHH1ORF15140P | |
| 15140 | M | M.AhyWP8ORF5810P (66% identity) | M.PfrEHH1ORF15140BP | |
| 15145 | IS5-like element ISPa41 family transposase | |||
| 15150 | M | M.Xfl8848ORF4215P (14% identity) | M.PfrEHH1ORF15140AP | |
| 15155 | 160 aa hypothetical protein | |||