Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C2-10-1-SUB-2 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C2-10-1-SUB-2 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,584,778 bp | CP125681 |
| plasmid pD25466: | 115,295 bp | CP125683 |
REBASE acronym: EcoUB2
Org_num: 71614
All begin QL117_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4380 | endoribonuclease SymE | |||
| 4385 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoUB2ORF4390P |
| 4390 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoUB2ORF4390P |
| 4395 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | EcoUB2ORF4390P |
| 4400 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10625 | DUF4060 family protein | |||
| 10630 | M | M.SenHNK130ORF1185P (95% identity) | M.EcoUB2ORF10630P | |
| 10635 | DUF1317 family protein | |||
| 14595 | drug/metabolite exporter YedA | |||
| 14600 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoUB2DcmP |
| 14605 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoUB2DcmP |
| 14610 | phosphohydrolase | |||
| 21145 | DNA-binding transcriptional regulator Fis | |||
| 21150 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoUB2ORF21150P |
| 21155 | DUF2556 family protein | |||
| 21770 | ribulose-phosphate 3-epimerase | |||
| 21775 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoUB2DamP |
| 21780 | cell division protein DamX | |||
| plasmid pD25466 | ||||
| 22570 | incFII family plasmid replication initiator | |||
| 22575 | M | M.SmaKC004ORF48960P (93% identity) | M.EcoUB2ORF22575P | |
| 22580 | 297 aa hypothetical protein | |||
| 22825 | 56 aa hypothetical protein | |||
| 22830 | M | M.SmaBWH35ORF25885P (100% identity) | M.EcoUB2ORF22830P | |
| 22835 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4365 | 978 aa hypothetical protein | |||
| 4370 | R | SenHNK130McrCP (100% identity) | EcoUB2McrCP | |
| 4375 | R | SenHNK130McrBP (100% identity) | EcoUB2McrBP | |
| 4380 | endoribonuclease SymE | |||
| 4395 | type I restriction-modification system | |||
| 4400 | R | SenHNK130MrrP (100% identity) | EcoUB2MrrP | |
| 4405 | GTPase | |||
| 10085 | site-specific DNA recombinase | |||
| 10090 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoUB2ORF10090P |
| 10095 | isocitrate/isopropylmalate family dehydrogenase | |||