Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM3-C3-10-1-7 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM3-C3-10-1-7 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,582,889 bp | CP125699 |
| plasmid pD25466: | 115,295 bp | CP125698 |
REBASE acronym: Eco1017
Org_num: 71616
All begin QL121_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22720 | endoribonuclease SymE | |||
| 22725 | S | S.SenHNK130ORF17125P (99% identity) | AACNNNNNNGTGC | S.Eco1017ORF22730P |
| 22730 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco1017ORF22730P |
| 22735 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco1017ORF22730P |
| 22740 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6605 | DUF4060 family protein | |||
| 6610 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco1017ORF6610P | |
| 6615 | DUF1317 family protein | |||
| 10555 | drug/metabolite exporter YedA | |||
| 10560 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco1017DcmP |
| 10565 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco1017DcmP |
| 10570 | phosphohydrolase | |||
| 17110 | DNA-binding transcriptional regulator Fis | |||
| 17115 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco1017ORF17115P |
| 17120 | DUF2556 family protein | |||
| 17735 | ribulose-phosphate 3-epimerase | |||
| 17740 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1017DamP |
| 17745 | cell division protein DamX | |||
| plasmid pD25466 | ||||
| 235 | incFII family plasmid replication initiator | |||
| 240 | M | M.SmaKC004ORF48960P (93% identity) | M.Eco1017ORF240P | |
| 245 | 297 aa hypothetical protein | |||
| 490 | 56 aa hypothetical protein | |||
| 495 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco1017ORF495P | |
| 500 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6065 | site-specific DNA recombinase | |||
| 6070 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco1017ORF6070P |
| 6075 | isocitrate/isopropylmalate family dehydrogenase | |||
| 22705 | 978 aa hypothetical protein | |||
| 22710 | R | SenHNK130McrCP (100% identity) | Eco1017McrCP | |
| 22715 | R | SenHNK130McrBP (100% identity) | Eco1017McrBP | |
| 22720 | endoribonuclease SymE | |||
| 22735 | type I restriction-modification system | |||
| 22740 | R | SenHNK130MrrP (100% identity) | Eco1017MrrP | |
| 22745 | GTPase | |||