Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM3-C3-16hr-CCT-25- 7 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM3-C3-16hr-CCT-25- 7 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,584,779 bp | CP125691 |
| plasmid pD25466: | 115,309 bp | CP125693 |
REBASE acronym: Eco257
Org_num: 71617
All begin QL122_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7335 | adenine/cytosine-specific restriction | |||
| 7340 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco257ORF7345P |
| 7345 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco257ORF7345P |
| 7350 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco257ORF7345P |
| 7355 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1105 | DUF1317 family protein | |||
| 1110 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco257ORF1110P | |
| 1115 | DUF4060 family protein | |||
| 12330 | cell division protein DamX | |||
| 12335 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco257DamP |
| 12340 | ribulose-phosphate 3-epimerase | |||
| 12955 | DUF2556 family protein | |||
| 12960 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco257ORF12960P |
| 12965 | DNA-binding transcriptional regulator Fis | |||
| 19495 | phosphohydrolase | |||
| 19500 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco257DcmP |
| 19505 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco257DcmP |
| 19510 | drug/metabolite exporter YedA | |||
| plasmid pD25466 | ||||
| 22520 | 297 aa hypothetical protein | |||
| 22525 | M | M.Eco1012ORF155BP (100% identity) | M.Eco257ORF22525BP | |
| 22530 | M | M.SmaE28ORF26800P (43% identity) | M.Eco257ORF22525AP | |
| 22535 | incFII family plasmid replication initiator | |||
| 22915 | 73 aa hypothetical protein | |||
| 22920 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco257ORF22920P | |
| 22925 | 56 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1645 | isocitrate/isopropylmalate family dehydrogenase | |||
| 1650 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco257ORF1650P |
| 1655 | site-specific DNA recombinase | |||
| 7330 | GTPase | |||
| 7335 | R | SenHNK130MrrP (100% identity) | Eco257MrrP | |
| 7340 | type I restriction-modification system | |||
| 7355 | endoribonuclease SymE | |||
| 7360 | R | SenHNK130McrBP (100% identity) | Eco257McrBP | |
| 7365 | R | SenHNK130McrCP (100% identity) | Eco257McrCP | |
| 7370 | 978 aa hypothetical protein | |||