Thiothrix lacustris WS |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Thiothrix lacustris WS RM systems
Ref: Ravin,N.V. et al. unpublished
REBASE ref # 37434
| Sequence length: | GenBank #: | |
| Chromosome: | 3,955,784 bp | CP133334 |
| plasmid pThlacWS_1: | 141,598 bp | CP133335 |
| plasmid pThlacWS_2: | 20,159 bp | CP133333 |
REBASE acronym: TlaWS
Org_num: 71543
All begin RCS87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9160 | DUF6174 domain-containing protein | |||
| 9165 | R | TspKTORF17365P (86% identity) | TlaWSORF9170P | |
| 9170 | M | M.TspKTORF17365P (91% identity) | M.TlaWSORF9170P | |
| 9175 | S | S.Pst55ORF14410P (61% identity) | S.TlaWSORF9170P | |
| 9180 | transporter substrate-binding domain-containing | |||
| 15325 | 96 aa hypothetical protein | |||
| 15330 | M | M.TspASORF9230P (99% identity) | M.TlaWSORF15330P | |
| 15335 | type II toxin-antitoxin system | |||
| 15340 | DUF3368 domain-containing protein | |||
| 15345 | S | S1.TspASORF9230P (100% identity) | S1.TlaWSORF15330P | |
| 15350 | S | S.TspA52ORF4960P (66% identity) | S2.TlaWSORF15330P | |
| 15355 | S | S3.TspASORF9230P (92% identity) | S3.TlaWSORF15330P | |
| 15360 | metallophosphatase domain-containing protein | |||
| 15365 | ATP-binding protein | |||
| 15370 | R | TspASORF9230P (99% identity) | TlaWSORF15330P | |
| 15375 | permease | |||
| 17760 | 75 aa hypothetical protein | |||
| 17765 | S | S.TsiSSD2ORF12490P (40% identity) | S.TlaWSORF17770P | |
| 17770 | M | M.TspASORF7130P (92% identity) | M.TlaWSORF17770P | |
| 17775 | R | TspASORF7130P (99% identity) | TlaWSORF17770P | |
| 17780 | NifB/NifX family molybdenum-iron cluster-binding | |||
| 18550 | porphobilinogen synthase | |||
| 18555 | M | M.Tvi198ORF3907P (40% identity) | M.TlaWSORF18555P | |
| 18560 | Uma2 family endonuclease | |||
| 18565 | 68 aa hypothetical protein | |||
| 18570 | S | S.PbaSI3ORF25P (44% identity) | S.TlaWSORF18555P | |
| 18575 | Fic family protein | |||
| 18580 | R | KmiX21ORFCP (39% identity) | TlaWSORF18555P | |
| 18585 | shikimate dehydrogenase | |||
| plasmid pThlacWS_2 | ||||
| 85 | 166 aa hypothetical protein | |||
| 90 | R | TspK11ORF22710P (73% identity) | TlaWSORF100P | |
| 95 | S | S.PanLORF3405P (59% identity) | S.TlaWSORF100P | |
| 100 | M | M.GcaESORF1415P (76% identity) | M.TlaWSORF100P | |
| 105 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2215 | excinuclease ABC subunit UvrA | |||
| 2220 | M | M.TspCT3ORF14500P (84% identity) | M.TlaWSORF2220P | |
| 2225 | helix-turn-helix transcriptional regulator | |||
| 7370 | YgiQ family radical SAM protein | |||
| 7375 | R | TspQ5ORF8400P (93% identity) | TlaWSORF7380P | |
| 7380 | M | M.TspQ5ORF8400P (93% identity) | M.TlaWSORF7380P | |
| 7385 | DUF3362 domain-containing protein | |||
| 8355 | 113 aa hypothetical protein | |||
| 8360 | R | TspCT3ORF2035P (81% identity) | TlaWSORF8365P | |
| 8365 | M | M.TspQ5ORF11400P (85% identity) | M.TlaWSORF8365P | |
| 8370 | imidazole glycerol phosphate synthase subunit | |||
| 9025 | asparagine synthase-related protein | |||
| 9030 | M | M.TlaMK1ORF7960P (93% identity) | M.TlaWSORF9030P | |
| 9035 | R | TlaMK1ORF7960P (100% identity) | TlaWSORF9030P | |
| 9040 | asparagine synthase-related protein | |||
| 10285 | 151 aa hypothetical protein | |||
| 10295 | R | M.Tla21227ORFFP (34% identity) | TlaWSORF10310P | |
| 10300 | IS630 transposase-related protein | |||
| 10305 | transposase | |||
| 10310 | M | M.Tla21227ORFFP (64% identity) | M.TlaWSORF10310P | |
| 10315 | 105 aa hypothetical protein | |||
| 11245 | ribonucleoside-diphosphate reductase subunit | |||
| 11250 | R | R1.TlaMK1ORF10185P (83% identity) | R1.TlaWSORF11255P | |
| 11255 | M | M1.TlaMK1ORF10185P (99% identity) | M1.TlaWSORF11255P | |
| 11260 | R | R2.TlaMK1ORF10185P (99% identity) | R2.TlaWSORF11255P | |
| 11265 | R | R3.TlaMK1ORF10185P (100% identity) | R3.TlaWSORF11255P | |
| 11270 | M | M2.TlaMK1ORF10185P (98% identity) | M2.TlaWSORF11255P | |
| 11275 | ribonucleotide-diphosphate reductase subunit | |||
| 11455 | lipopolysaccharide heptosyltransferase II | |||
| 11460 | M | M.TspASORF14715P (10% identity) | M.TlaWSORF11460BP | |
| 11465 | IS607 family transposase | |||
| 11470 | RNA-guided endonuclease TnpB family protein | |||
| 11475 | M | M.TspASORF14715P (21% identity) | M.TlaWSORF11460AP | |
| 11480 | R | TspASORF14715P (52% identity) | TlaWSORF11460P | |
| 11485 | nucleotidyltransferase substrate | |||
| 12000 | nuclease-related domain-containing protein | |||
| 12005 | R | TlaMK1ORF6930P (99% identity) | TlaWSORF12005P | |
| 12010 | HIT family protein | |||
| 13635 | AAA family ATPase | |||
| 13640 | RM | Tla21227ORFJP (99% identity) | TlaWSORF13640P | |
| 13645 | 204 aa hypothetical protein | |||
| 13800 | type II toxin-antitoxin system VapB family | |||
| 13805 | RM | TspASORF1475P (93% identity) | TlaWSORF13805P | |
| 13810 | 5-3 exonuclease H3TH domain-containing | |||
| plasmid pThlacWS_1 | ||||
| 19525 | protein kinase | |||
| 19530 | S | S.Tla21227ORFIP (82% identity) | S.TlaWSORF19535P | |
| 19535 | M | M.Tla21227ORFIP (98% identity) | M.TlaWSORF19535P | |
| 19540 | 3-5 exonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9995 | 49 aa hypothetical protein | |||
| 10000 | R | Msp268ORFBP (54% identity) | TlaWSORF10020P | |
| 10005 | PIN domain-containing protein | |||
| 10010 | XRE family transcriptional regulator | |||
| 10015 | 262 aa hypothetical protein | |||
| 10020 | M | M.NspAPG3ORF24350P (51% identity) | M.TlaWSORF10020P | |
| 10025 | ATP-binding protein | |||
| 10105 | aspartate carbamoyltransferase catalytic | |||
| 10110 | R | TspKTORF8505P (86% identity) | TlaWSORF10125P | |
| 10115 | DUF4276 family protein | |||
| 10120 | AAA family ATPase | |||
| 10125 | M | M.TspA52ORF11905P (31% identity) | M.TlaWSORF10125BP | |
| 10130 | ISL3 family transposase | |||
| 10135 | M | M.TspKTORF8505P (36% identity) | M.TlaWSORF10125AP | |
| 10140 | DUF4391 domain-containing protein | |||
| 11725 | NADH-quinone oxidoreductase subunit M | |||
| 11730 | R | TspKTORF4100P (96% identity) | TlaWSORF11740P | |
| 11735 | PDDEXK nuclease domain-containing protein | |||
| 11740 | M | M.PaeYL84ORF8690P (64% identity) | M.TlaWSORF11740P | |
| 11745 | S8 family peptidase | |||
| 11765 | IS607 family transposase | |||
| 11770 | M | M.Aac10aORF8035P (57% identity) | M.TlaWSORF11770P | |
| 11775 | DUF1566 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 765 | methionine synthase | |||
| 770 | R | UbaMDMrr2P (78% identity) | TlaWSMrr2P | |
| 775 | UPF0175 family protein | |||
| 5650 | GlsB/YeaQ/YmgE family stress response membrane | |||
| 5655 | R | TspASMrrP (100% identity) | TlaWSMrrP | |
| 5660 | type II toxin-antitoxin system RelE/ParE family | |||