Escherichia coli CUVET17-972 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli CUVET17-972 RM systems
Ref: Sroithongkham,P. et al. unpublished
REBASE ref # 37451
| Sequence length: | GenBank #: | |
| Chromosome: | 4,868,421 bp | CP115370 |
| plasmid pCUVET17-972.1: | 138,366 bp | CP115371 |
REBASE acronym: Eco972
Org_num: 71392
All begin PCS79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4090 | transposase | |||
| 4095 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco972ORF4100P |
| 4100 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco972ORF4100P |
| 4105 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco972ORF4100P |
| 4110 | AAA family ATPase | |||
| 20600 | DUF4942 domain-containing protein | |||
| 20605 | M | M.SsoSE61ORF6540P (13% identity) | CCANNNNNNNNTGAA | M.Eco972ORF20605AP |
| 20610 | IS3-like element IS2 family transposase | |||
| 20615 | M | M.SflN110ORF19045P (86% identity) | CCANNNNNNNNTGAA | M.Eco972ORF20605BP |
| 20620 | S | S.SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | S.Eco972ORF20605P |
| 20625 | R | SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | Eco972ORF20605P |
| 20630 | 50 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1685 | cell division protein DamX | |||
| 1690 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco972DamP |
| 1695 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco972ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9600 | phosphohydrolase | |||
| 9605 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco972DcmP |
| 9610 | V | V.SflSTLE1DcmP (100% identity) | V.Eco972DcmP | |
| 9615 | drug/metabolite exporter YedA | |||
| 11645 | DUF977 family protein | |||
| 11650 | M | M.SsoSE61ORF20220P (100% identity) | M.Eco972ORF11650P | |
| 11655 | IS66-like element ISEc22 family transposase | |||
| 13525 | DUF3927 family protein | |||
| 13540 | M | M.SsoCS14ORF10750P (100% identity) | A | M.Eco972ORF13540P |
| 13545 | TrmB family transcriptional regulator | |||
| 15855 | phosphoadenosine phosphosulfate reductase family | |||
| 15860 | M | M.EcoEC416ORF37680P (100% identity) | M.Eco972ORF15860P | |
| 15865 | TraR/DksA family transcriptional regulator | |||
| 20580 | HNH endonuclease | |||
| 20585 | R | SflSTLE4ORF19250P (100% identity) | Eco972ORF20585P | |
| 20590 | McrC family protein | |||
| 20990 | sigma 54-interacting transcriptional regulator | |||
| 20995 | R | Ecop10BORF20145P (100% identity) | Eco972ORF20995P | |
| 21000 | IS21-like element IS100 family transposase | |||
| plasmid pCUVET17-972.1 | ||||
| 24660 | 73 aa hypothetical protein | |||
| 24665 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco972ORF24665P | |
| 24670 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20585 | HNH endonuclease | |||
| 20590 | R | SflSTLE4McrCP (100% identity) | Eco972McrCP | |
| 20595 | R | SflSTLE4McrBP (100% identity) | Eco972McrBP | |
| 20600 | DUF4942 domain-containing protein | |||