Thiothrix subterranea DNT52 |
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Putative Thiothrix subterranea DNT52 RM systems
Ref: Ravin,N.V. et al. unpublished
REBASE ref # 37434
Complete sequence: 4,255,904 bp
GenBank #: CP133217
REBASE acronym: TsuDNT52
Org_num: 71346
All begin RCG00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3300 | transcriptional regulator | |||
| 3305 | M | M.TsuDNT53ORFNP (95% identity) | M.TsuDNT52ORF3305P | |
| 3310 | IS66 family transposase | |||
| 3315 | 163 aa hypothetical protein | |||
| 3320 | UPF0175 family protein | |||
| 3325 | R | Tsp52ORFYP (100% identity) | TsuDNT52ORF3305P | |
| 3330 | tRNA 5-hydroxyuridine modification protein YegQ | |||
| 4505 | protein-export chaperone SecB | |||
| 4510 | S | S.Tsp52ORFEP (100% identity) | S.TsuDNT52ORF4515P | |
| 4515 | M | M.TsuDNT53ORFDBP (100% identity) | M.TsuDNT52ORF4515BP | |
| 4520 | 87 aa hypothetical protein | |||
| 4525 | transposase | |||
| 4530 | M | M.TsuDNT53ORFDAP (100% identity) | M.TsuDNT52ORF4515AP | |
| 4535 | 229 aa hypothetical protein | |||
| 5060 | sigma-54 dependent transcriptional regulator | |||
| 5065 | R | Tsp52ORFRP (100% identity) | TsuDNT52ORF5075P | |
| 5070 | UPF0175 family protein | |||
| 5075 | M | M.Tsp52ORFRP (100% identity) | M.TsuDNT52ORF5075P | |
| 5080 | DUF1778 domain-containing protein | |||
| 5085 | GNAT family N-acetyltransferase | |||
| 5090 | IS3 family transposase | |||
| 5095 | S | S1.Tsp52ORFRP (92% identity) | S1.TsuDNT52ORF5075P | |
| 5100 | ISKra4 family transposase | |||
| 5105 | S | S2.TsuDNT53ORFEP (98% identity) | S2.TsuDNT52ORF5075P | |
| 5110 | substrate-binding domain-containing protein | |||
| 9765 | molybdopterin-synthase adenylyltransferase MoeB | |||
| 9770 | M | M.TsuDNT53ORFUP (100% identity) | M.TsuDNT52ORF9770P | |
| 9775 | S | S1.Tsp52ORFXP (100% identity) | S1.TsuDNT52ORF9770P | |
| 9780 | S | S2.TsuDNT53ORFUP (100% identity) | S2.TsuDNT52ORF9770P | |
| 9785 | S | S3.TsuDNT53ORFUP (100% identity) | ATGNNNNNNRGTC | S3.TsuDNT52ORF9770P |
| 9790 | virulence protein RhuM/Fic/DOC family protein | |||
| 9795 | 64 aa hypothetical protein | |||
| 9800 | DUF3037 domain-containing protein | |||
| 9805 | 244 aa hypothetical protein | |||
| 9810 | R | Tsp52ORFXP (100% identity) | TsuDNT52ORF9770P | |
| 9815 | 263 aa hypothetical protein | |||
| 15760 | AAA family ATPase | |||
| 15765 | S | S.TsuDNT53ORFIP (64% identity) | S.TsuDNT52ORF15770P | |
| 15770 | M | M.TsuDNT53ORFIP (98% identity) | M.TsuDNT52ORF15770P | |
| 15775 | ATP-binding protein | |||
| 16530 | type II toxin-antitoxin system ParD family | |||
| 16535 | R | TsuDNT53ORFJP (99% identity) | TsuDNT52ORF16575P | |
| 16540 | IS3 family transposase | |||
| 16545 | AAA family ATPase | |||
| 16550 | S | S2.TsuDNT53ORFJP (100% identity) | GAGNNNNNNNCTGC | S2.TsuDNT52ORF16575P |
| 16555 | 87 aa hypothetical protein | |||
| 16560 | transposase | |||
| 16565 | 53 aa hypothetical protein | |||
| 16570 | S | S1.Tsp52IIP (100% identity) | S1.TsuDNT52ORF16575P | |
| 16575 | M | M.TsuDNT53ORFJP (100% identity) | M.TsuDNT52ORF16575P | |
| 16580 | FtsH protease activity modulator HflK | |||
| 17115 | AarF/ABC1/UbiB kinase family protein | |||
| 17120 | R | Tsp52ORFOP (100% identity) | TsuDNT52ORF17140P | |
| 17125 | UPF0175 family protein | |||
| 17130 | DUF3368 domain-containing protein | |||
| 17135 | S | S.Tsp52ORFOP (100% identity) | S.TsuDNT52ORF17140P | |
| 17140 | M | M.Tsp52ORFOP (100% identity) | M.TsuDNT52ORF17140P | |
| 17145 | FAD-linked oxidase C-terminal domain-containing | |||
| 18740 | DUF4405 domain-containing protein | |||
| 18745 | R | TsuDNT53ORFKP (100% identity) | CACNNNNNNCTGG | TsuDNT52ORF18765P |
| 18750 | helix-turn-helix domain-containing protein | |||
| 18755 | PIN domain-containing protein | |||
| 18760 | S | S.TsuDNT53ORFKP (100% identity) | CACNNNNNNCTGG | S.TsuDNT52ORF18765P |
| 18765 | M | M.Tsp52I (100% identity) | CACNNNNNNCTGG | M.TsuDNT52ORF18765P |
| 18770 | 155 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2960 | type II toxin-antitoxin system PemK/MazF family | |||
| 2965 | M | M.TspQ5ORF11460AP (100% identity) | M1.TsuDNT52ORF2965P | |
| 2970 | M | M2.Tsp52ORFQP (100% identity) | M2.TsuDNT52ORF2965P | |
| 2975 | DNA helicase II | |||
| 3910 | GTPase ObgE | |||
| 3915 | R | TsuDNT53ORFPP (93% identity) | TsuDNT52ORF3920P | |
| 3920 | M | M.Tsp52ORFBP (100% identity) | M.TsuDNT52ORF3920P | |
| 3925 | 50S ribosomal protein L27 | |||
| 4070 | ribonucleotide-diphosphate reductase subunit | |||
| 4075 | M | M.TsuDNT53ORFQP (100% identity) | M.TsuDNT52ORF4075P | |
| 4080 | 221 aa hypothetical protein | |||
| 4075 | 494 aa hypothetical protein | |||
| 4080 | R | TsuDNT53ORFQP (100% identity) | TsuDNT52ORF4080P | |
| 4085 | ribonucleoside-diphosphate reductase subunit | |||
| 4150 | ATP-binding protein | |||
| 4155 | R | R1.TsuDNT53ORFCP (99% identity) | R1.TsuDNT52ORF4165P | |
| 4160 | R | R2.TsuDNT53ORFCP (100% identity) | R2.TsuDNT52ORF4165P | |
| 4165 | M | M.TsuDNT53ORFCP (100% identity) | M.TsuDNT52ORF4165P | |
| 4170 | 626 aa hypothetical protein | |||
| 4800 | 151 aa hypothetical protein | |||
| 4805 | R | TsuDNT53ORFOP (87% identity) | TsuDNT52ORF4810P | |
| 4810 | M | M.TsuDNT53ORFOP (100% identity) | M.TsuDNT52ORF4810P | |
| 4815 | polyamine aminopropyltransferase | |||
| 5165 | endonuclease domain-containing protein | |||
| 5170 | RM | Tsp52ORFNP (97% identity) | TsuDNT52ORF5170P | |
| 5175 | YebC/PmpR family DNA-binding transcriptional | |||
| 7260 | 123 aa hypothetical protein | |||
| 7265 | R | TsuDNT53ORFAP (100% identity) | TsuDNT52ORF7265P | |
| 7270 | 306 aa hypothetical protein | |||
| 8330 | NgoBV family restriction endonuclease | |||
| 8335 | M | M.TsuDNT53ORFFP (100% identity) | M.TsuDNT52ORF8335P | |
| 8340 | AAA family ATPase | |||
| 11435 | 241 aa hypothetical protein | |||
| 11440 | M | M.TsuDNT53ORFGP (97% identity) | M.TsuDNT52ORF11440P | |
| 11445 | R | TsuDNT53ORFGP (100% identity) | TsuDNT52ORF11440P | |
| 11450 | 68 aa hypothetical protein | |||
| 13820 | RloB family protein | |||
| 13825 | M | M.Tsp52ORFUP (99% identity) | M.TsuDNT52ORF13825P | |
| 13830 | DUF499 domain-containing protein | |||
| 14375 | nuclear transport factor 2 family protein | |||
| 14380 | RM | Tsp52ORFDP (100% identity) | TsuDNT52ORF14380P | |
| 14385 | XisH family protein | |||
| 16725 | ISKra4 family transposase | |||
| 16730 | M | M.Tsp52ORFWP (92% identity) | M.TsuDNT52ORF16730P | |
| 16735 | 126 aa hypothetical protein | |||
| 19205 | 93 aa hypothetical protein | |||
| 19210 | RM | Tsp52ORFTP (100% identity) | TsuDNT52ORF19210P | |
| 19215 | DUF3368 domain-containing protein | |||
| 20005 | 64 aa hypothetical protein | |||
| ??? | RM | Tsp52ORFJP (90% identity) | TsuDNT52ORF20010P | |
| 20020 | AAA family ATPase | |||
| 20485 | AAA family ATPase | |||
| 20490 | RM | Tsp52ORFHP (100% identity) | TsuDNT52ORF20490P | |
| 20495 | 240 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12930 | SEC-C metal-binding domain-containing protein | |||
| 12935 | M | M.Tsp52ORFCP (100% identity) | M.TsuDNT52ORF12935P | |
| 12940 | XisH family protein | |||
| 12945 | XisI protein | |||
| 12950 | R | TsuDNT53ORFHP (100% identity) | TsuDNT52ORF12935P | |
| 12955 | diacylglycerol kinase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13105 | lytic transglycosylase domain-containing | |||
| 13110 | R | Tsp52McrBP (98% identity) | TsuDNT52McrBP | |
| 13115 | R | TsuDNT53McrCP (100% identity) | TsuDNT52McrCP | |
| 13120 | adenosylmethionine--8-amino-7-oxononanoate | |||
| 21015 | ATP-dependent chaperone ClpB | |||
| 21020 | R | Tsp52MrrP (100% identity) | TsuDNT52MrrP | |
| 21025 | GlsB/YeaQ/YmgE family stress response membrane | |||