Escherichia coli R12 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli R12 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,228,698 bp | CP107153 |
| plasmid pR12-B45342: | 123,733 bp | CP107154 |
REBASE acronym: EcosR12
Org_num: 69861
All begin OGM41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18110 | endoribonuclease SymE | |||
| 18115 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosR12ORF18125P |
| 18120 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosR12ORF18125P |
| 18125 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosR12ORF18125P |
| 18130 | restriction endonuclease | |||
| 19935 | ash family protein | |||
| 19940 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcosR12ORF19945P |
| 19945 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcosR12ORF19945P |
| 19950 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcosR12ORF19945P |
| 19955 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2910 | sialate O-acetylesterase | |||
| 2915 | M | M1.EcosS3ORF2905P (100% identity) | M1.EcosR12ORF2915P | |
| 2920 | TrmB family transcriptional regulator | |||
| 2925 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcosR12ORF2915P |
| 2930 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcosR12ORF2915P |
| 2935 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M2.EcosR12ORF2915P |
| 2940 | antiterminator Q family protein | |||
| 3810 | drug/metabolite exporter YedA | |||
| 3815 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR12DcmP |
| 3820 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR12DcmP |
| 3825 | phosphohydrolase | |||
| 7580 | 121 aa hypothetical protein | |||
| 7585 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcosR12ORF7590P |
| 7590 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcosR12ORF7590P |
| 7595 | 257 aa hypothetical protein | |||
| 7720 | phage lysis protein EssD | |||
| 7725 | M | M.EcosR6ORF7985P (100% identity) | M.EcosR12ORF7725P | |
| 7730 | 95 aa hypothetical protein | |||
| 7765 | LexA family transcriptional regulator | |||
| 7770 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcosR12ORF7770P |
| 7775 | PerC family transcriptional regulator | |||
| 11435 | DNA-binding transcriptional regulator Fis | |||
| 11440 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR12ORF11440P |
| 11445 | DUF2556 family protein | |||
| 12035 | ribulose-phosphate 3-epimerase | |||
| 12040 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR12DamP |
| 12045 | cell division protein DamX | |||
| 17765 | helix-turn-helix domain-containing protein | |||
| 17770 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosR12ORF17770P |
| 17775 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosR12ORF17770P |
| 17780 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosR12ORF17770P |
| 17785 | McrC family protein | |||
| 23415 | 71 aa hypothetical protein | |||
| 23420 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR12ORF23420P | |
| 23425 | helix-turn-helix domain-containing protein | |||
| 25675 | TrmB family transcriptional regulator | |||
| 25680 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosR12ORF25680P |
| 25695 | DUF3927 family protein | |||
| plasmid pR12-B45342 | ||||
| 26425 | 73 aa hypothetical protein | |||
| 26430 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosR12ORF26430P | |
| 26435 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17780 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17785 | R | EcosS9McrCP (100% identity) | EcosR12McrCP | |
| 17790 | R | EcosS3McrBP (100% identity) | EcosR12McrBP | |
| 17795 | glycosyltransferase | |||
| 18125 | type I restriction-modification system subunit | |||
| 18130 | R | Ecou021MrrP (100% identity) | EcosR12MrrP | |
| 18135 | BrnT family toxin | |||