Escherichia coli R11 |
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Putative Escherichia coli R11 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,120,131 bp | CP107155 |
| plasmid pR11-698-1: | 110,062 bp | CP107156 |
| plasmid pR11-698-2: | 95,994 bp | CP107157 |
REBASE acronym: EcosR11
Org_num: 69860
All begin OGM40_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17425 | endoribonuclease SymE | |||
| 17430 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosR11ORF17440P |
| 17435 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosR11ORF17440P |
| 17440 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosR11ORF17440P |
| 17445 | restriction endonuclease | |||
| 19245 | ash family protein | |||
| 19250 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcosR11ORF19255P |
| 19255 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcosR11ORF19255P |
| 19260 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcosR11ORF19255P |
| 19265 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pR11-698-1 | ||||
| 25670 | IS1 family transposase | |||
| 25675 | R | EcosE2ORF23285P (100% identity) | CAAYNNNNNCTGG | EcosR11ORF25685P |
| 25680 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S1.EcosR11ORF25685P |
| 25685 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNCTGG | M.EcosR11ORF25685P |
| 25690 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3470 | drug/metabolite exporter YedA | |||
| 3475 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR11DcmP |
| 3480 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR11DcmP |
| 3485 | phosphohydrolase | |||
| 10640 | DNA-binding transcriptional regulator Fis | |||
| 10645 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR11ORF10645P |
| 10650 | DUF2556 family protein | |||
| 11240 | ribulose-phosphate 3-epimerase | |||
| 11245 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR11DamP |
| 11250 | cell division protein DamX | |||
| 15230 | PerC family transcriptional regulator | |||
| 15235 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcosR11ORF15235P |
| 15240 | LexA family transcriptional regulator | |||
| 15270 | 67 aa hypothetical protein | |||
| 15275 | M | M.Sso63633ORF22290P (100% identity) | M.EcosR11ORF15275P | |
| 15280 | phage lysis protein EssD | |||
| 17080 | helix-turn-helix domain-containing protein | |||
| 17085 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosR11ORF17085P |
| 17090 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosR11ORF17085P |
| 17095 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosR11ORF17085P |
| 17100 | McrC family protein | |||
| 22730 | 72 aa hypothetical protein | |||
| 22735 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR11ORF22735P | |
| 22740 | helix-turn-helix domain-containing protein | |||
| 24980 | TrmB family transcriptional regulator | |||
| 24985 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosR11ORF24985P |
| 25000 | DUF3927 family protein | |||
| plasmid pR11-698-1 | ||||
| 25575 | 73 aa hypothetical protein | |||
| 25580 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcosR11ORF25580P |
| 25585 | 103 aa hypothetical protein | |||
| plasmid pR11-698-2 | ||||
| 25825 | 103 aa hypothetical protein | |||
| 25830 | M | M.SspPIBORF23080P (100% identity) | M.EcosR11ORF25830P | |
| 25835 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17095 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17100 | R | EcosS9McrCP (100% identity) | EcosR11McrCP | |
| 17105 | R | EcosS3McrBP (100% identity) | EcosR11McrBP | |
| 17110 | glycosyltransferase | |||
| 17440 | type I restriction-modification system subunit | |||
| 17445 | R | Ecou021MrrP (100% identity) | EcosR11MrrP | |
| 17450 | BrnT family toxin | |||