Escherichia coli R6 |
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Putative Escherichia coli R6 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,297,994 bp | CP107178 |
| plasmid pR6-1255-1: | 150,400 bp | CP107179 |
| plasmid pR6-1255-2: | 88,703 bp | CP107180 |
REBASE acronym: EcosR6
Org_num: 69867
All begin OGM35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18520 | endoribonuclease SymE | |||
| 18525 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosR6ORF18535P |
| 18530 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosR6ORF18535P |
| 18535 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosR6ORF18535P |
| 18540 | restriction endonuclease | |||
| 20350 | ash family protein | |||
| 20355 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcosR6ORF20360P |
| 20360 | M | M.EcosS9ORF4930P (99% identity) | AAAGNNNNGTT | M.EcosR6ORF20360P |
| 20365 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcosR6ORF20360P |
| 20370 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2900 | sialate O-acetylesterase | |||
| 2905 | M | M1.EcosS3ORF2905P (100% identity) | M1.EcosR6ORF2905P | |
| 2910 | TrmB family transcriptional regulator | |||
| 2915 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcosR6ORF2905P |
| 2920 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcosR6ORF2905P |
| 2925 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M2.EcosR6ORF2905P |
| 2930 | antiterminator Q family protein | |||
| 3785 | drug/metabolite exporter YedA | |||
| 3790 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR6DcmP |
| 3795 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR6DcmP |
| 3800 | phosphohydrolase | |||
| 7840 | 121 aa hypothetical protein | |||
| 7845 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcosR6ORF7850P |
| 7850 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcosR6ORF7850P |
| 7855 | 257 aa hypothetical protein | |||
| 7980 | phage lysis protein EssD | |||
| 7985 | M | M.EcosR4ORF19095P (100% identity) | M.EcosR6ORF7985P | |
| 7990 | 95 aa hypothetical protein | |||
| 8025 | LexA family transcriptional regulator | |||
| 8030 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcosR6ORF8030P |
| 8035 | PerC family transcriptional regulator | |||
| 11810 | DNA-binding transcriptional regulator Fis | |||
| 11815 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR6ORF11815P |
| 11820 | DUF2556 family protein | |||
| 12410 | ribulose-phosphate 3-epimerase | |||
| 12415 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR6DamP |
| 12420 | cell division protein DamX | |||
| 18175 | helix-turn-helix domain-containing protein | |||
| 18180 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosR6ORF18180P |
| 18185 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosR6ORF18180P |
| 18190 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosR6ORF18180P |
| 18195 | McrC family protein | |||
| 23845 | 71 aa hypothetical protein | |||
| 23850 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR6ORF23850P | |
| 23855 | helix-turn-helix domain-containing protein | |||
| 26105 | TrmB family transcriptional regulator | |||
| 26110 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcosR6ORF26110P |
| 26125 | DUF3927 family protein | |||
| plasmid pR6-1255-1 | ||||
| 26995 | 73 aa hypothetical protein | |||
| 27000 | M | M.KpnVA569ORF28145P (100% identity) | M.EcosR6ORF27000P | |
| 27005 | 103 aa hypothetical protein | |||
| plasmid pR6-1255-2 | ||||
| 27195 | 104 aa hypothetical protein | |||
| 27200 | M | M.Sen4346ORF22715P (100% identity) | M.EcosR6ORF27200P | |
| 27205 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18190 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 18195 | R | EcosS9McrCP (100% identity) | EcosR6McrCP | |
| 18200 | R | EcosS3McrBP (100% identity) | EcosR6McrBP | |
| 18205 | glycosyltransferase | |||
| 18535 | type I restriction-modification system subunit | |||
| 18540 | R | Ecou021MrrP (100% identity) | EcosR6MrrP | |
| 18545 | BrnT family toxin | |||