Escherichia coli S8 |
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Putative Escherichia coli S8 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,241,944 bp | CP107126 |
| plasmid pS8-566: | 140,908 bp | CP107127 |
REBASE acronym: EcoS8
Org_num: 69880
All begin OGM50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18180 | endoribonuclease SymE | |||
| 18185 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS8ORF18195P |
| 18190 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS8ORF18195P |
| 18195 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS8ORF18195P |
| 18200 | restriction endonuclease | |||
| 20005 | ash family protein | |||
| 20010 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS8ORF20015P |
| 20015 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS8ORF20015P |
| 20020 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS8ORF20015P |
| 20025 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2910 | sialate O-acetylesterase | |||
| 2915 | M | M1.EcosS3ORF2905P (100% identity) | M1.EcoS8ORF2915P | |
| 2920 | TrmB family transcriptional regulator | |||
| 2925 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoS8ORF2915P |
| 2930 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoS8ORF2915P |
| 2935 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M2.EcoS8ORF2915P |
| 2940 | antiterminator Q family protein | |||
| 3810 | drug/metabolite exporter YedA | |||
| 3815 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS8DcmP |
| 3820 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS8DcmP |
| 3825 | phosphohydrolase | |||
| 7585 | 121 aa hypothetical protein | |||
| 7590 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoS8ORF7595P |
| 7595 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoS8ORF7595P |
| 7600 | 257 aa hypothetical protein | |||
| 7725 | phage lysis protein EssD | |||
| 7730 | M | M.EcosR6ORF7985P (100% identity) | M.EcoS8ORF7730P | |
| 7735 | 95 aa hypothetical protein | |||
| 7770 | LexA family transcriptional regulator | |||
| 7775 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoS8ORF7775P |
| 7780 | PerC family transcriptional regulator | |||
| 11555 | DNA-binding transcriptional regulator Fis | |||
| 11560 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS8ORF11560P |
| 11565 | DUF2556 family protein | |||
| 12090 | ribulose-phosphate 3-epimerase | |||
| 12095 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS8DamP |
| 12100 | cell division protein DamX | |||
| 16510 | conjugal transfer protein TraG N-terminal | |||
| 16515 | M | M.EcosS3ORF15775P (100% identity) | M.EcoS8ORF16515P | |
| 16520 | R | EcosS3ORF15775P (100% identity) | EcoS8ORF16515P | |
| 16525 | response regulator receiver domain | |||
| 23495 | 71 aa hypothetical protein | |||
| 23500 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS8ORF23500P | |
| 23505 | helix-turn-helix domain-containing protein | |||
| 25755 | TrmB family transcriptional regulator | |||
| 25760 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS8ORF25760P |
| 25775 | DUF3927 family protein | |||
| plasmid pS8-566 | ||||
| 26585 | 73 aa hypothetical protein | |||
| 26590 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS8ORF26590P | |
| 26595 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17850 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17855 | R | EcosS9McrCP (100% identity) | EcoS8McrCP | |
| 17860 | R | EcosS3McrBP (100% identity) | EcoS8McrBP | |
| 17865 | glycosyltransferase | |||
| 18195 | type I restriction-modification system subunit | |||
| 18200 | R | Ecou021MrrP (100% identity) | EcoS8MrrP | |
| 18205 | BrnT family toxin | |||