Escherichia coli S5 |
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Putative Escherichia coli S5 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,258,595 bp | CP107137 |
| plasmid pS5-88-1: | 158,955 bp | CP107138 |
| plasmid pS5-88-2: | 89,263 bp | CP107139 |
REBASE acronym: EcoS5
Org_num: 69877
All begin OGM47_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18280 | endoribonuclease SymE | |||
| 18285 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS5ORF18295P |
| 18290 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS5ORF18295P |
| 18295 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS5ORF18295P |
| 18300 | restriction endonuclease | |||
| 20105 | ash family protein | |||
| 20110 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS5ORF20115P |
| 20115 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS5ORF20115P |
| 20120 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS5ORF20115P |
| 20125 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2900 | sialate O-acetylesterase | |||
| 2905 | M | M1.EcosS3ORF2905P (100% identity) | M1.EcoS5ORF2905P | |
| 2910 | TrmB family transcriptional regulator | |||
| 2915 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoS5ORF2905P |
| 2920 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoS5ORF2905P |
| 2925 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M2.EcoS5ORF2905P |
| 2930 | antiterminator Q family protein | |||
| 3800 | drug/metabolite exporter YedA | |||
| 3805 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS5DcmP |
| 3810 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS5DcmP |
| 3815 | phosphohydrolase | |||
| 7600 | 121 aa hypothetical protein | |||
| 7605 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoS5ORF7610P |
| 7610 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoS5ORF7610P |
| 7615 | 257 aa hypothetical protein | |||
| 7740 | phage lysis protein EssD | |||
| 7745 | M | M.EcosR6ORF7985P (100% identity) | M.EcoS5ORF7745P | |
| 7750 | 95 aa hypothetical protein | |||
| 7785 | LexA family transcriptional regulator | |||
| 7790 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoS5ORF7790P |
| 7795 | PerC family transcriptional regulator | |||
| 11580 | DNA-binding transcriptional regulator Fis | |||
| 11585 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS5ORF11585P |
| 11590 | DUF2556 family protein | |||
| 12180 | ribulose-phosphate 3-epimerase | |||
| 12185 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS5DamP |
| 12190 | cell division protein DamX | |||
| 17935 | helix-turn-helix domain-containing protein | |||
| 17940 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS5ORF17940P |
| 17945 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS5ORF17940P |
| 17950 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS5ORF17940P |
| 17955 | McrC family protein | |||
| 23615 | 71 aa hypothetical protein | |||
| 23620 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS5ORF23620P | |
| 23625 | helix-turn-helix domain-containing protein | |||
| 25875 | TrmB family transcriptional regulator | |||
| 25880 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS5ORF25880P |
| 25895 | DUF3927 family protein | |||
| plasmid pS5-88-1 | ||||
| 26825 | 73 aa hypothetical protein | |||
| 26830 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS5ORF26830P | |
| 26835 | 103 aa hypothetical protein | |||
| plasmid pS5-88-2 | ||||
| 27025 | 103 aa hypothetical protein | |||
| 27030 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoS5ORF27030P |
| 27035 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17950 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17955 | R | EcosS9McrCP (100% identity) | EcoS5McrCP | |
| 17960 | R | EcosS3McrBP (100% identity) | EcoS5McrBP | |
| 17965 | glycosyltransferase | |||
| 18295 | type I restriction-modification system subunit | |||
| 18300 | R | Ecou021MrrP (100% identity) | EcoS5MrrP | |
| 18305 | BrnT family toxin | |||