Helicobacter pylori Lithuania75 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Lithuania75 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 12402
Complete sequence: 1,624,644 bp
GenBank #: CP002334
REBASE acronym: Hpy75
Org_num: 6610
All begin HPLT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2250 | polyphosphate kinase | |||
| 2255 | S | S.HpyU413ORF2140P (97% identity) | S.Hpy75ORF2260P | |
| 2260 | M | M.HpySW07ORF2140P (97% identity) | M.Hpy75ORF2260P | |
| ??? | R | HpyU009ORF2170P (92% identity) | Hpy75ORF2260P | |
| 2280 | 631 aa hypothetical protein | |||
| 3980 | 48 aa hypothetical protein | |||
| ??? | S | S.HpyHP12ORFAP (98% identity) | S.Hpy75ORFDP | |
| 3995 | cadmium-transporting ATPase | |||
| 4280 | hydroxyethylthiazole kinase | |||
| ??? | R | HpyI015ORF2875P (95% identity) | Hpy75ORFCP | |
| ??? | S | S.Hpyfe36ORF2995P (77% identity) | S.Hpy75ORFCP | |
| ??? | M | M.HpyNCI55XVI (89% identity) | M.Hpy75ORFCP | |
| 4315 | 227 aa hypothetical protein | |||
| 7635 | 30 aa hypothetical protein | |||
| ??? | S | S.HpyPR06ORF6885P (44% identity) | S.Hpy75ORF7575P | |
| 7650 | relaxase | |||
| 7820 | VirD4 coupling protein | |||
| 7825 | R | typeI restriction enzyme R protein | Hpy75ORF7825P | |
| 7830 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M.HpySWT12VII (63% identity) | CCTTC | M.Hpy75ORF250P |
| 255 | sodium/proline symporter | |||
| 495 | HrgA protein | |||
| 500 | M | M.HpyC106ORF475P (94% identity) | GATC | M.Hpy75ORF500P |
| 505 | alpha-1,2-fucosyltransferase | |||
| 1345 | exodeoxyribonuclease VII large subunit | |||
| 1350 | R | HpySP505IVP (96% identity) | CCGG | Hpy75ORF1355P |
| 1355 | M | M.HpyL010VI (99% identity) | CCGG | M.Hpy75ORF1355P |
| 1360 | ATP-dependent protease binding subunit | |||
| 1595 | polysaccharide deacetylase | |||
| 1600 | R | HpySP206VP (100% identity) | CTNAG | Hpy75ORF1605P |
| 1605 | M | M.HpyR07V (99% identity) | CTNAG | M.Hpy75ORF1605P |
| 1610 | 123 aa hypothetical protein | |||
| 2355 | GTP-binding protein | |||
| 2360 | M | M.HpyLI26II (99% identity) | ACNGT | M.Hpy75ORF2360P |
| 2365 | R | Hpy19CORFRP (100% identity) | ACNGT | Hpy75ORF2360P |
| 2370 | type II DNA modification enzyme | |||
| 2365 | type II restriction endonuclease | |||
| 2370 | M | M.HpyL010ORF2255P (98% identity) | ACGT | M.Hpy75ORF2370P |
| ??? | R | 203 aa hypothetical protein HPKB_0466 | ACGT | Hpy75ORF2370P |
| 2390 | catalase-like protein | |||
| 2480 | DNA gyrase subunit B | |||
| ??? | M | M.HpyLI21ORF4260P (98% identity) | GTAC | M.Hpy75ORFAP |
| 2495 | R | HpyJO9IXP (90% identity) | GTAC | Hpy75ORFAP |
| 2500 | outer membrane protein | |||
| 3330 | anaerobic glycerol-3-phosphate | |||
| ??? | RM | HpyKG3ORF3410P (87% identity) | Hpy75ORFBP | |
| 3345 | outer membrane protein HorF | |||
| 3425 | 270 aa hypothetical protein | |||
| 3430 | M | M.HpyISR10V (97% identity) | CCNNGG | M.Hpy75ORF3430P |
| 3435 | R | HpyLI28IVP (99% identity) | CCNNGG | Hpy75ORF3430P |
| 3440 | 119 aa hypothetical protein | |||
| 4615 | flagellar hook protein FlgE | |||
| 4620 | R | HpyR06XP (97% identity) | GTNNAC | Hpy75ORF4625P |
| 4625 | M | M.HpyBR4IX (97% identity) | GTNNAC | M.Hpy75ORF4625P |
| 4630 | Rep helicase | |||
| 5365 | biotin carboxylase | |||
| 5370 | M | M.HpySW24III (98% identity) | TCNNGA | M.Hpy75ORF5370P |
| 5375 | R | HpyUSU101ORF5545P (100% identity) | TCNNGA | Hpy75ORF5370P |
| 5380 | 197 aa hypothetical protein | |||
| 5575 | 144 aa hypothetical protein | |||
| 5580 | M | M.HpyH023XIV (98% identity) | GCGC | M.Hpy75ORF5580P |
| 5585 | 67 aa hypothetical protein | |||
| 6035 | 222 aa hypothetical protein | |||
| 6040 | M | M.HpyIS3I (98% identity) | CATG | M.Hpy75ORF6040P |
| 6045 | 59 aa hypothetical protein | |||
| 6775 | carboxyl-terminal protease | |||
| 6780 | R | HpyL011VIIP (97% identity) | GANTC | Hpy75ORF6785P |
| 6785 | M | M.HpyCOL104VI (99% identity) | GANTC | M.Hpy75ORF6785P |
| 6790 | hypothetical protein | |||
| 6785 | adenine specific DNA methyltransferase | |||
| ??? | RM | HpySP507ORF6580P (83% identity) | Hpy75ORF6790P | |
| 6800 | nicotinate-nucleotide pyrophosphorylase | |||
| 6855 | response regulator | |||
| 6860 | R | HpySP302VIIP (98% identity) | GAAGA | Hpy75ORF6865P |
| 6865 | M | M1.HpyH016IV (98% identity) | GAAGA | M1.Hpy75ORF6865P |
| 6870 | M | M.HpySWT08ORF6650P (99% identity) | GAAGA | M2.Hpy75ORF6865P |
| 6875 | type III restriction enzyme R protein | |||
| 7305 | DNA polymerase I (polA) | |||
| ??? | S | S.Hpy380ORF3015P (68% identity) | S.Hpy75ORF7320P | |
| 7320 | RM | HpyLI13ORF7195P (98% identity) | Hpy75ORF7320P | |
| 7325 | 191 aa hypothetical protein | |||
| 7455 | 355 aa hypothetical protein | |||
| 7460 | M | M2.HpyR08III (99% identity) | GATGG | M1.Hpy75ORF7460P |
| 7465 | M | M2.HpySWT08III (99% identity) | CCATC | M2.Hpy75ORF7460P |
| 7470 | R | HpySW30VIIIP (98% identity) | CCATC | Hpy75ORF7460P |
| 7475 | outer membrane protein (omp32) | |||
| 7555 | 42 aa hypothetical protein | |||
| 7560 | RM | HpyLI26ORF7435P (88% identity) | Hpy75ORF7560P | |
| 7565 | type III restriction enzyme R protein (res) | |||
| 7890 | 195 aa hypothetical protein | |||
| 7895 | M | M.HpyT005ORF7205P (99% identity) | M.Hpy75ORF7895P | |
| 7900 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6870 | type IIS restriction enzyme M2 protein (mod) | |||
| 6875 | R | type III restriction enzyme R protein | Hpy75ORF6875P | |
| 6880 | rod shape-determining protein MreC | |||
| 6930 | endonuclease G | |||
| 6935 | M | M.HpyKH27ORFVP (95% identity) | M.Hpy75ORF6935P | |
| 6940 | R | HpyG005ORF6785P (91% identity) | Hpy75ORF6935P | |
| 6945 | biotin synthase | |||
| 7560 | type IIS R-M system restriction/modification | |||
| 7565 | R | HpyL036ORF7450P (95% identity) | Hpy75ORF7570P | |
| ??? | M | M.HpySP105ORF7040P (95% identity) | M.Hpy75ORF7570P | |
| 7580 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2535 | glutamine synthetase | |||
| 2540 | R | HpyF017GmrSDP (88% identity) | Hpy75GmrSDP | |
| 2545 | 50S ribosomal protein L9 | |||