Helicobacter pylori Gambia94/24 |
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Putative Helicobacter pylori Gambia94/24 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 12401
Complete sequence: 1,709,911 bp
GenBank #: CP002332
REBASE acronym: Hpy94
Org_num: 6608
All begin HPGAM_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2345 | polyphosphate kinase | |||
| 2350 | S | S.HpyPE13ORF2155P (99% identity) | S.Hpy94ORF2355P | |
| 2355 | M | M.HpyU437ORF2115P (97% identity) | M.Hpy94ORF2355P | |
| 2360 | R | HpyBR14ORF2145P (94% identity) | Hpy94ORF2355P | |
| 2365 | 631 aa hypothetical protein | |||
| 4070 | 37 aa hypothetical protein | |||
| 4075 | S | S.Hpy94ORF4385P (98% identity) | S.Hpy94ORF4075P | |
| 4080 | heavy-metal cation-transporting P-type | |||
| 4370 | hydroxyethylthiazole kinase | |||
| 4375 | R | HpySP321ORF4230P (95% identity) | Hpy94ORF4385P | |
| 4380 | S | S.Hpy94ORF4075P (98% identity) | S.Hpy94ORF4385P | |
| 4385 | M | M.HpyDO6ORF4055P (94% identity) | M.Hpy94ORF4385P | |
| 4390 | 228 aa hypothetical protein | |||
| 7330 | 30 aa hypothetical protein | |||
| 7335 | S | S.HpyGM3ORF7200P (47% identity) | S.Hpy94ORF7335P | |
| 7340 | relaxase | |||
| 7535 | 262 aa hypothetical protein | |||
| 7540 | S | S.HpyC027XVIII (43% identity) | S.Hpy94ORF7480P | |
| 7545 | formyltetrahydrofolate deformylase | |||
| 8095 | 42 aa hypothetical protein | |||
| 8100 | S | S.HpyGM7ORF7390P (47% identity) | S.Hpy94ORF8105P | |
| 8105 | M | M.HpySP317IV (96% identity) | M.Hpy94ORF8105P | |
| 8110 | R | HpyU102VIP (96% identity) | Hpy94ORF8105P | |
| 8115 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | 330 aa hypothetical protein | |||
| 245 | M | M1.HpyGM7VI (100% identity) | CCTC | M1.Hpy94ORF245P |
| 250 | M | M2.HpyGM7VIP (94% identity) | CCTC | M2.Hpy94ORF245P |
| 255 | type II DNA modification enzyme | |||
| 250 | type II DNA modification enzyme | |||
| 255 | M | M.HpyCRI4IX (99% identity) | GTSAC | M.Hpy94ORF255P |
| 260 | R | HpySP325XIP (99% identity) | GTSAC | Hpy94ORF255P |
| 265 | type II DNA modification enzyme | |||
| 265 | type II DNA modification enzyme | |||
| 270 | R | HpyPE20VIIIP (91% identity) | CCTTC | Hpy94ORF275P |
| 275 | M | M.HpyPE13IV (98% identity) | CCTTC | M.Hpy94ORF275P |
| 280 | sodium/proline symporter | |||
| 495 | HrgA protein | |||
| 500 | M | M.HpyU435VII (98% identity) | GATC | M.Hpy94ORF500P |
| 515 | 176 aa hypothetical protein | |||
| 1465 | exodeoxyribonuclease VII large subunit | |||
| 1470 | M | M.HpyU427XII (99% identity) | TCGA | M.Hpy94ORF1470P |
| 1475 | 204 aa hypothetical protein | |||
| 1475 | 204 aa hypothetical protein | |||
| ??? | R | HpyNY40ORF891P (88% identity) | CCGG | Hpy94ORF1490P |
| 1490 | M | M.HpyU435IV (100% identity) | CCGG | M.Hpy94ORF1490P |
| 1495 | heat shock protein | |||
| 2435 | GTP-binding protein TypA | |||
| 2440 | M | M.Hpy5005ORF8010P (98% identity) | ACNGT | M.Hpy94ORF2440P |
| 2445 | R | type II restriction endonuclease | ACNGT | Hpy94ORF2440P |
| 2450 | type II DNA modification (methyltransferase) | |||
| 2445 | type II restriction endonuclease | |||
| 2450 | M | M.HpyNCI18ORFUP (98% identity) | ACGT | M.Hpy94ORF2450P |
| ??? | R | HpyGM7ORF2255P (99% identity) | ACGT | Hpy94ORF2450P |
| 2465 | catalase-like protein | |||
| 2565 | DNA gyrase subunit B | |||
| 2570 | M | M.HpyBR2IX (98% identity) | GTAC | M.Hpy94ORF2570P |
| 2575 | R | HpyK002VIP (93% identity) | GTAC | Hpy94ORF2570P |
| 2580 | Outer membrane protein | |||
| 3445 | anaerobic glycerol-3-phosphate | |||
| ??? | RM | HpyU418ORF3185P (79% identity) | Hpy94ORF3450P | |
| 3460 | 827 aa hypothetical protein | |||
| 3535 | 270 aa hypothetical protein | |||
| ??? | M | M.HpyH020ORF3275P (99% identity) | CCNNGG | M.Hpy94ORF3536P |
| ??? | R | HpyGM7ORF3255P (99% identity) | CCNNGG | Hpy94ORF3536P |
| 3565 | 166 aa hypothetical protein | |||
| 4670 | flagellar hook protein FlgE | |||
| 4675 | R | HpyME46XP (98% identity) | GTNNAC | Hpy94ORF4680P |
| 4680 | M | M.HpyGM7XII (99% identity) | GTNNAC | M.Hpy94ORF4680P |
| 4695 | 31 aa hypothetical protein | |||
| 5565 | biotin carboxylase | |||
| 5580 | M | M.HpyPO06XI (100% identity) | TCNNGA | M.Hpy94ORF5580P |
| 5585 | R | HpyU301XIIP (100% identity) | TCNNGA | Hpy94ORF5580P |
| 5590 | 201 aa hypothetical protein | |||
| 5775 | 144 aa hypothetical protein | |||
| 5780 | M | M.HpyNG19XIV (98% identity) | GCGC | M.Hpy94ORF5780P |
| 5785 | 67 aa hypothetical protein | |||
| 6245 | 222 aa hypothetical protein | |||
| 6250 | M | M.HpyGM7I (99% identity) | CATG | M.Hpy94ORF6250P |
| 6255 | 94 aa hypothetical protein | |||
| 6980 | carboxyl-terminal protease | |||
| 6985 | R | HpyU416VIIIP (100% identity) | GANTC | Hpy94ORF6990P |
| 6990 | M | M.HpyU403X (99% identity) | GANTC | M.Hpy94ORF6990P |
| 7000 | 36 aa hypothetical protein | |||
| 7000 | 36 aa hypothetical protein | |||
| ??? | RM | HpyZ011ORF6920P (70% identity) | Hpy94ORF7010P | |
| 7015 | nicotinate-nucleotide pyrophosphorylase | |||
| 7065 | transcriptional regulator | |||
| 7070 | R | HpyU427VIP (99% identity) | GAAGA | Hpy94ORF7075P |
| 7075 | M | M2.HpyISR9VIII (99% identity) | GAAGA | M1.Hpy94ORF7075P |
| 7080 | M | M2.HpyT008VI (99% identity) | GAAGA | M2.Hpy94ORF7075P |
| 7085 | type III restriction-modification system: | |||
| 7735 | DNA polymerase I | |||
| 7740 | S | S.HpyK101ORF7070P (97% identity) | S.Hpy94ORF7745P | |
| 7745 | RM | HpyGM4ORF6980P (99% identity) | Hpy94ORF7745P | |
| 7750 | 191 aa hypothetical protein | |||
| 7880 | 355 aa hypothetical protein | |||
| 7885 | M | M2.HpyU413III (99% identity) | GATGG | M1.Hpy94ORF7885P |
| 7890 | M | M1.HpyU424III (94% identity) | CCATC | M2.Hpy94ORF7885P |
| 7895 | R | HpyKH8ORFNP (98% identity) | CCATC | Hpy94ORF7885P |
| 7900 | Outer membrane protein | |||
| 7990 | 30 aa hypothetical protein | |||
| ??? | RM | HpyBR14ORF6975P (66% identity) | Hpy94ORF8000P | |
| 8190 | 67 aa hypothetical protein | |||
| 8195 | R | Hpy94ORF7075P (65% identity) | GAAGA | Hpy94ORF8195P |
| 8200 | transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7080 | type IIS restriction enzyme M2 protein (mod) | |||
| 7085 | M | M.HpyU428ORF7470P (55% identity) | M1.Hpy94ORF7085P | |
| 7090 | M | M.HpyU417ORF7300P (42% identity) | M2.Hpy94ORF7085P | |
| 7095 | R | HpySP19ORF6725P (93% identity) | Hpy94ORF7085P | |
| 7100 | rod shape-determining protein MreC | |||
| 7155 | endonuclease | |||
| 7160 | M | M.HpyMT5118ORF6540P (95% identity) | M.Hpy94ORF7160P | |
| 7165 | R | HpyPE116ORF7580P (84% identity) | Hpy94ORF7160P | |
| 7170 | biotin synthase | |||
| 8015 | R | Hpy9310ORFOP (96% identity) | Hpy94ORF8020P | |
| ??? | M | M.HpyGM8XIV (97% identity) | M.Hpy94ORF8020P | |
| 8030 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2615 | glutamine synthetase | |||
| 2620 | R | HpySP317GmrSDP (86% identity) | Hpy94GmrSDP | |
| 2625 | 50S ribosomal protein L9 | |||