Escherichia coli 1344_LBHALD |
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Putative Escherichia coli 1344_LBHALD RM systems
Ref: DOSSOUVI,K.M. et al. unpublished
REBASE ref # 37110
| Sequence length: | GenBank #: | |
| Chromosome: | 4,810,505 bp | CP129240 |
| plasmid p2_LBHALD: | 85,984 bp | CP129242 |
| plasmid p3_LBHALD: | 90,429 bp | CP129243 |
REBASE acronym: EcoLD
Org_num: 68946
All begin QU831_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6050 | IS66 family transposase | |||
| 6055 | R | EmaC12ORF18910P (100% identity) | GAACNNNNNTGC | EcoLDORF6060P |
| 6060 | M | M.Sen6640ORF2690P (100% identity) | GAACNNNNNTGC | M.EcoLDORF6060P |
| 6065 | S | S.SflN101ORF19075P (100% identity) | GAACNNNNNTGC | S.EcoLDORF6060P |
| 6070 | 48 aa hypothetical protein | |||
| 6150 | transcription factor | |||
| 6155 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoLDORF6155P |
| 6160 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.EcoLDORF6155P |
| 6165 | toxin-antitoxin system toxin DNA ADP-ribosyl | |||
| 6170 | toxin-antitoxin system antitoxin DNA ADP-ribosyl | |||
| 6175 | R | Sbo49812IP (82% identity) | YTCANNNNNNGTTY | EcoLDORF6155P |
| 6180 | AIDA repeat-containing protein | |||
| plasmid p2_LBHALD | ||||
| 24635 | recombinase family protein | |||
| ??? | S | S3.Eho700ORF10625P (68% identity) | S2.EcoLDORF24655P | |
| 24645 | R | EcosR11ORF25685P (100% identity) | EcoLDORF24655P | |
| 24650 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.EcoLDORF24655P |
| 24655 | M | M.KpnKPA1ORF26345P (100% identity) | M.EcoLDORF24655P | |
| 24660 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10590 | drug/metabolite exporter YedA | |||
| 10595 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoLDDcmP |
| 10600 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoLDDcmP |
| 10605 | phosphohydrolase | |||
| 14055 | ribulose-phosphate 3-epimerase | |||
| 14060 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLDDamP |
| 14065 | cell division protein DamX | |||
| 18075 | DNA-binding transcriptional regulator Fis | |||
| 18080 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoLDORF18080P |
| 18085 | DUF2556 family protein | |||
| 19325 | 68 aa hypothetical protein | |||
| 19330 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.EcoLDORF19330P |
| 19335 | 345 aa hypothetical protein | |||
| plasmid p2_LBHALD | ||||
| 24360 | 73 aa hypothetical protein | |||
| 24365 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoLDORF24365P |
| 24370 | 103 aa hypothetical protein | |||
| 24460 | EAL domain-containing protein | |||
| 24465 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoLDORF24470P |
| 24470 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoLDORF24470P |
| 24475 | IS1 family transposase | |||
| plasmid p3_LBHALD | ||||
| 25290 | 73 aa hypothetical protein | |||
| 25295 | M | M.Ero695ORF23565P (100% identity) | M.EcoLDORF25295P | |
| 25300 | 155 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3800 | isocitrate/isopropylmalate family dehydrogenase | |||
| 3805 | R | EmaE2C08McrCP (100% identity) | EcoLDMcrCP | |
| 3810 | R | EcoteDMcrBP (100% identity) | EcoLDMcrBP | |
| 3815 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2530 | TraR/DksA family transcriptional regulator | |||
| 2535 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoLDORF2535P |
| 2540 | replication endonuclease | |||