Escherichia coli TUM1886 |
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Putative Escherichia coli TUM1886 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 5,639,055 bp | CP128970 |
| plasmid pMTY1886_IncN: | 49,620 bp | CP128974 |
| plasmid pMTY1886_untypable_1: | 97,409 bp | CP128972 |
REBASE acronym: EcoUM1886
Org_num: 68997
All begin QVM91_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17520 | 58 aa hypothetical protein | |||
| 17525 | M | M.EcoW14588ORF21505P (100% identity) | M.EcoUM1886ORF17525P | |
| 17530 | S | S.EcoM1886ORF33950P (100% identity) | YTCANNNNNNGTNG | S1.EcoUM1886ORF17525P |
| 17535 | toxin-antitoxin system toxin DNA ADP-ribosyl | |||
| 17540 | toxin-antitoxin system antitoxin DNA ADP-ribosyl | |||
| 17545 | R | EcoM1886ORF33950P (100% identity) | EcoUM1886ORF17525P | |
| 17550 | S | S2.EcoEC0005ORF20610P (100% identity) | S2.EcoUM1886ORF17525P | |
| 17555 | IS66 family transposase | |||
| 23410 | DUF262 domain-containing HNH endonuclease family | |||
| 23415 | R | EcoM1886ORF45330P (100% identity) | CCANNNNNNNNNTTGG | EcoUM1886ORF23420P |
| 23420 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoUM1886ORF23420P |
| 23425 | S | S.EcoM1886ORF45330P (100% identity) | CCANNNNNNNNNTTGG | S.EcoUM1886ORF23420P |
| 23430 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2170 | cell division protein DamX | |||
| 2175 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoUM1886DamP |
| 2180 | ribulose-phosphate 3-epimerase | |||
| 2700 | DUF2556 family protein | |||
| 2705 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoUM1886ORF2705P |
| 2710 | DNA-binding transcriptional regulator Fis | |||
| 4645 | type B 50S ribosomal protein L31 | |||
| 4650 | R | EcoM1886ORF9020P (100% identity) | GAATTC | EcoUM1886ORF4655P |
| 4655 | M | M.SenH18ORF28321P (100% identity) | GAATTC | M.EcoUM1886ORF4655P |
| 4660 | CcdB family protein | |||
| 10075 | TrmB family transcriptional regulator | |||
| 10080 | M | M.EcoM1886ORF19460P (100% identity) | M.EcoUM1886ORF10080P | |
| 10085 | class II holin family protein | |||
| 10275 | phosphohydrolase | |||
| 10280 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoUM1886DcmP |
| 10285 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoUM1886DcmP |
| 10290 | drug/metabolite exporter YedA | |||
| 23085 | phage holin, lambda family | |||
| 23090 | M | M.EcoM1886ORF44700P (100% identity) | M.EcoUM1886ORF23090P | |
| 23095 | 67 aa hypothetical protein | |||
| 23125 | LexA family transcriptional regulator | |||
| 23130 | M | M.EcoM1886ORF44780P (100% identity) | GATC | M.EcoUM1886ORF23130P |
| 23135 | PerC family transcriptional regulator | |||
| 23635 | HNH endonuclease | |||
| 23640 | R | EcoM1886ORF45750P (100% identity) | EcoUM1886ORF23640P | |
| 23645 | helicase YjhR | |||
| plasmid pMTY1886_IncN | ||||
| 29340 | EAL domain-containing protein | |||
| 29345 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoUM1886ORF29350P |
| 29350 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoUM1886ORF29350P |
| 29355 | IS1 family transposase | |||
| plasmid pMTY1886_untypable_1 | ||||
| 28545 | SPFH domain-containing protein | |||
| 28565 | M | M.EcoM1886ORF54930P (100% identity) | M.EcoUM1886ORF28565P | |
| 28570 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4730 | DUF1281 domain-containing protein | |||
| 4735 | R | EcoD22ORF27410P (100% identity) | CRACAG | EcoUM1886ORF4740P |
| 4740 | M | M.SenH18ORF28191P (100% identity) | CRACAG | M.EcoUM1886ORF4740P |
| 4745 | IS3 family transposase | |||