Escherichia coli TUM1881 |
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Putative Escherichia coli TUM1881 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 5,180,264 bp | CP128979 |
| plasmid pMTY1881_IncF: | 138,779 bp | CP128980 |
| plasmid pMTY1881_IncI: | 121,438 bp | CP128981 |
| plasmid pMTY1881_IncN: | 49,245 bp | CP128982 |
| plasmid pMTY1881_untypable: | 6,267 bp | CP128983 |
REBASE acronym: EcoM1881
Org_num: 68996
All begin QVM90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10785 | IS1 family transposase | |||
| 10790 | M | M.Kpn37509ORF26375P (12% identity) | M.EcoM1881ORF10790P | |
| 10795 | S | S.Eco1881ORF21040P (100% identity) | S.EcoM1881ORF10790P | |
| 10800 | YecA family protein | |||
| 10805 | R | Eco1881ORF21040P (100% identity) | EcoM1881ORF10790P | |
| 10810 | SprT family zinc-dependent metalloprotease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1635 | cell division protein DamX | |||
| 1640 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoM1881DamP |
| 1645 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.EcoLH99cORF21935P (100% identity) | ATGCAT | M.EcoM1881ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 6755 | Com family DNA-binding transcriptional | |||
| 6760 | M | M.SenYU39ORF1896P (100% identity) | M.EcoM1881ORF6760P | |
| 6765 | ribosome-associated translation inhibitor RaiA | |||
| 10215 | TrmB family transcriptional regulator | |||
| 10220 | M | M.Eco1881ORF19930P (100% identity) | M.EcoM1881ORF10220P | |
| 10235 | 96 aa hypothetical protein | |||
| 10510 | phosphohydrolase | |||
| 10515 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoM1881DcmP |
| 10520 | V | V.EcoLH99cDcmP (100% identity) | V.EcoM1881DcmP | |
| 10525 | drug/metabolite exporter YedA | |||
| 11260 | TrmB family transcriptional regulator | |||
| 11265 | M | M.EcotcmA3ORF19525P (98% identity) | M.EcoM1881ORF11265P | |
| 11280 | 143 aa hypothetical protein | |||
| 12485 | TrmB family transcriptional regulator | |||
| 12490 | M | M.Eco1881ORF24340P (100% identity) | M.EcoM1881ORF12490P | |
| 12495 | 104 aa hypothetical protein | |||
| 13385 | DUF977 family protein | |||
| 13390 | M | M.Eco1881ORF26100P (100% identity) | M.EcoM1881ORF13390P | |
| 13395 | 88 aa hypothetical protein | |||
| 13460 | TrmB family transcriptional regulator | |||
| 13465 | M | M.Eco1881ORF26230P (100% identity) | M.EcoM1881ORF13465P | |
| 13470 | 104 aa hypothetical protein | |||
| 15500 | TrmB family transcriptional regulator | |||
| 15505 | M | M.Eco1881ORF22000P (100% identity) | M.EcoM1881ORF15505P | |
| 15520 | 96 aa hypothetical protein | |||
| 19090 | phage holin, lambda family | |||
| 19095 | M | M.EcoSTEC413ORF8565P (100% identity) | M.EcoM1881ORF19095P | |
| 19100 | TrmB family transcriptional regulator | |||
| 19145 | NinE family protein | |||
| 19150 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoM1881ORF19150P |
| 19155 | recombination protein NinB | |||
| plasmid pMTY1881_IncF | ||||
| 27280 | 73 aa hypothetical protein | |||
| 27285 | M | M.Eco1881ORF53010P (98% identity) | M.EcoM1881ORF27285P | |
| 27290 | 101 aa hypothetical protein | |||
| plasmid pMTY1881_IncI | ||||
| 27525 | 103 aa hypothetical protein | |||
| 27530 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoM1881ORF27530P |
| 27535 | 73 aa hypothetical protein | |||
| plasmid pMTY1881_IncN | ||||
| 28050 | EAL domain-containing protein | |||
| 28055 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoM1881ORF28060P |
| 28060 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoM1881ORF28060P |
| 28065 | IS1 family transposase | |||
| plasmid pMTY1881_untypable | ||||
| 28315 | 147 aa hypothetical protein | |||
| 28320 | M | M.SflFF34ORF24420P (100% identity) | CCNGG | M.EcoM1881ORF28320P |
| 28325 | R | EcoeV01ORF23390P (100% identity) | CCNGG | EcoM1881ORF28320P |
| 28330 | Rop family plasmid primer RNA-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3755 | AIPR family protein | |||
| 3760 | M | M.SflFF17ORF4015P (100% identity) | GTCTC | M.EcoM1881ORF3760P |
| 3765 | R | EcoLS45ORF22315P (100% identity) | GTCTC | EcoM1881ORF3760P |
| 3770 | transposase | |||