Escherichia coli strain_139 |
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Putative Escherichia coli strain_139 RM systems
Ref: El Aila,N.A. et al. unpublished
REBASE ref # 37121
Complete sequence: 5,152,092 bp
GenBank #: CP128448
REBASE acronym: Ecos139
Org_num: 69017
All begin QT510_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 13320 | endoribonuclease SymE | |||
| 13325 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Ecos139ORF13335P |
| 13330 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Ecos139ORF13335P |
| 13335 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Ecos139ORF13335P |
| 13340 | restriction endonuclease | |||
| 15280 | malate dehydrogenase (quinone) | |||
| ??? | S | S.EcosS9ORF4930P (94% identity) | S.Ecos139ORF15285P | |
| 15290 | ash family protein | |||
| 23865 | type IV toxin-antitoxin system AbiEi family | |||
| 23870 | R | EcosS9ORF4930P (100% identity) | Ecos139ORF23875P | |
| 23875 | M | M.EcosS9ORF4930P (97% identity) | M.Ecos139ORF23875P | |
| 23880 | 5-(carboxyamino)imidazole ribonucleotide | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4180 | ribulose-phosphate 3-epimerase | |||
| 4185 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecos139DamP |
| 4190 | cell division protein DamX | |||
| 10120 | drug/metabolite exporter YedA | |||
| 10125 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Ecos139DcmP |
| 10130 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Ecos139DcmP |
| 10135 | phosphohydrolase | |||
| 21770 | 73 aa hypothetical protein | |||
| 21775 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Ecos139ORF21775P |
| 21780 | 103 aa hypothetical protein | |||
| 22280 | DUF2556 family protein | |||
| 22285 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Ecos139ORF22285P |
| 22290 | DNA-binding transcriptional regulator Fis | |||
| 24385 | TrmB family transcriptional regulator | |||
| 24390 | M | M.EcosS9ORF10680P (100% identity) | A | M.Ecos139ORF24390P |
| 24405 | DUF3927 family protein | |||
| 24560 | transposase | |||
| 24565 | M | M1.EcosS9ORF2810P (87% identity) | M.Ecos139ORF24565P | |
| 24570 | helix-turn-helix domain-containing protein | |||
| 24780 | 71 aa hypothetical protein | |||
| 24785 | M | M.KpnYN1ORFGP (89% identity) | M.Ecos139ORF24785P | |
| 24790 | helix-turn-helix transcriptional regulator | |||
| 25115 | DUF4198 domain-containing protein | |||
| ??? | R | EcosS9ORF2810P (98% identity) | GGTCTC | Ecos139ORF25125P |
| 25125 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M.Ecos139ORF25125P |
| 25130 | response regulator transcription factor | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13335 | class I SAM-dependent DNA methyltransferase | |||
| 13340 | R | Ecou021MrrP (100% identity) | Ecos139MrrP | |
| 13345 | BrnT family toxin | |||