Escherichia coli O2:K1:H7 |
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Putative Escherichia coli O2:K1:H7 RM systems
Ref: Ha,E.-J. unpublished
REBASE ref # 37057
Complete sequence: 5,133,783 bp
GenBank #: CP126940
REBASE acronym: Eco18055
Org_num: 68961
All begin QQA30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21260 | adenine/cytosine-specific restriction | |||
| 21265 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | Eco18055ORF21270P |
| 21270 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.Eco18055ORF21270P |
| 21275 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.Eco18055ORF21270P |
| 21280 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1855 | cell division protein DamX | |||
| 1860 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco18055DamP |
| 1865 | ribulose-phosphate 3-epimerase | |||
| 2455 | DUF2556 family protein | |||
| 2460 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco18055ORF2460P |
| 2465 | DNA-binding transcriptional regulator Fis | |||
| 6170 | PerC family transcriptional regulator | |||
| 6175 | M | M.Ecoppa1ORF22275P (100% identity) | GATC | M.Eco18055ORF6175P |
| 6180 | LexA family transcriptional regulator | |||
| 7210 | DUF1382 family protein | |||
| 7215 | M | M.EcoC0488ORF13090P (100% identity) | M.Eco18055ORF7215P | |
| 7220 | PerC family transcriptional regulator | |||
| 10905 | phosphohydrolase | |||
| 10910 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco18055DcmP |
| 10915 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco18055DcmP |
| 10920 | drug/metabolite exporter YedA | |||
| 14170 | 39 aa hypothetical protein | |||
| 14190 | M | M.SboBSORF1444P (100% identity) | A | M.Eco18055ORF14190P |
| 14195 | TrmB family transcriptional regulator | |||
| 18165 | LexA family transcriptional regulator | |||
| 18170 | M | M.EcosEC8ORF20220P (100% identity) | GATC | M.Eco18055ORF18170P |
| 18175 | PerC family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6370 | recombinase family protein | |||
| 6375 | R | EspFAAGmrSDP (100% identity) | Eco18055GmrSDP | |
| 6380 | DinI-like family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15050 | NinE family protein | |||
| 15055 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco18055ORF15055P |
| 15060 | recombination protein NinB | |||