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Putative Helicobacter pylori BS26 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,578,380 bp
GenBank #: CP122951
REBASE acronym: HpyBS26
Org_num: 68424
All begin QAD59_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
3015 | DNA cytosine methyltransferase | |||
3020 | M | M.HpyHP22ORF7495P (100% identity) | M.HpyBS26ORF3020P | |
3025 | S | S.HpyHP22ORF7495P (100% identity) | S.HpyBS26ORF3020P | |
3030 | type I restriction endonuclease | |||
3405 | heavy metal translocating P-type ATPase | |||
3410 | S | S.HpyBS30ORF4085P (52% identity) | S1.HpyBS26ORF3410P | |
3415 | S | S.Hpy334ORFTP (41% identity) | S2.HpyBS26ORF3410P | |
3420 | outer membrane beta-barrel protein HofF | |||
5030 | 44 aa hypothetical protein | |||
5035 | R | Hpyfe8ORF2045P (94% identity) | CTANNNNNNTC | HpyBS26ORF5040P |
5040 | M | M.Hpyfe35ORF5005P (96% identity) | CTANNNNNNTC | M.HpyBS26ORF5040P |
5045 | S | S.Hpyfe35ORF5005P (97% identity) | CTANNNNNNTC | S.HpyBS26ORF5040P |
5055 | RNA degradosome polyphosphate kinase | |||
7630 | SprT family zinc-dependent metalloprotease | |||
7635 | R | Hpyfe70ORF7585P (97% identity) | CRTANNNNNNNTC | HpyBS26ORF7640P |
7640 | M | M.Hpyfe61ORF7705P (97% identity) | CRTANNNNNNNTC | M.HpyBS26ORF7640P |
7645 | S | S.HpySG24V (97% identity) | CRTANNNNNNNTC | S.HpyBS26ORF7640P |
7650 | 59 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
55 | 713 aa hypothetical protein | |||
60 | RM | HpyV007ORF7125P (84% identity) | HpyBS26ORF60P | |
65 | RNA-directed DNA polymerase | |||
150 | outer membrane protein | |||
155 | R | HpyHP22ORF2910P (99% identity) | CCATC | HpyBS26ORF160P |
160 | M | M1.HpyHP22ORF2910P (100% identity) | CCATC | M1.HpyBS26ORF160P |
165 | M | M2.HpyAL05ORFHP (99% identity) | CCATC | M2.HpyBS26ORF160P |
170 | LptF/LptG family permease | |||
300 | VRR-NUC domain-containing protein | |||
305 | R | HpysHP34ORF1435P (100% identity) | HpyBS26ORF310P | |
310 | M | M.HpysHP34ORF1435P (100% identity) | M.HpyBS26ORF310P | |
315 | S | S.HpyHP22ORF3060P (99% identity) | S.HpyBS26ORF310P | |
320 | DNA polymerase I | |||
580 | UDP-N-acetylmuramate dehydrogenase | |||
??? | M | M.HpyHP22ORF3345P (100% identity) | M.HpyBS26ORF585P | |
590 | R | HpyHP22ORF3345P (100% identity) | HpyBS26ORF585P | |
595 | glycosyltransferase family 8 protein | |||
1430 | serine O-acetyltransferase | |||
1435 | R | HpyHP22ORF4195P (99% identity) | CATG | HpyBS26ORF1440P |
1440 | M | M.Hpyfe92ORF1610P (98% identity) | CATG | M.HpyBS26ORF1440P |
1445 | HAD family hydrolase | |||
1890 | flagellar biosynthesis anti-sigma factor FlgM | |||
1895 | M | M.HpyNP13XIV (97% identity) | GCGC | M.HpyBS26ORF1895P |
1900 | 144 aa hypothetical protein | |||
2070 | Laminin subunit alpha-2 precursor | |||
2075 | R | HpyHP22ORF4845P (93% identity) | TCNNGA | HpyBS26ORF2080P |
2080 | M | M.HpySG13XIII (99% identity) | TCNNGA | M.HpyBS26ORF2080P |
2085 | acetyl-CoA carboxylase biotin carboxylase | |||
2735 | ATP-dependent helicase | |||
2740 | M | M.HpyK029IX (98% identity) | GTNNAC | M.HpyBS26ORF2740P |
2745 | R | HpySG33XP (96% identity) | GTNNAC | HpyBS26ORF2740P |
2750 | flagellar hook protein FlgE | |||
3005 | phosphatase PAP2 family protein | |||
3010 | R | HpysHP34ORF6260P (100% identity) | GGCC | HpyBS26ORF3015P |
3015 | M | M.HpysHP34ORF6260P (100% identity) | GGCC | M.HpyBS26ORF3015P |
3020 | type I restriction-modification system subunit | |||
3945 | (Fe-S)-binding protein | |||
3950 | RM | HpyL015ORF3170P (83% identity) | HpyBS26ORF3950P | |
3955 | outer membrane protein | |||
4820 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
4825 | R | HpyHP22ORF5710P (98% identity) | GTAC | HpyBS26ORF4830P |
4830 | M | M.HpyHP22ORF5710P (100% identity) | GTAC | M.HpyBS26ORF4830P |
4835 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
4915 | catalase | |||
4920 | R | HpyHP22ORF35P (99% identity) | ACGT | HpyBS26ORF4925P |
4925 | M | M.HpyHP22ORF35P (99% identity) | ACGT | M.HpyBS26ORF4925P |
4930 | GIY-YIG nuclease family protein | |||
4925 | DNA cytosine methyltransferase | |||
4930 | R | HpyHP22ORF45P (100% identity) | ACNGT | HpyBS26ORF4935P |
4935 | M | M.HpyHP22ORF45P (99% identity) | ACNGT | M.HpyBS26ORF4935P |
4940 | translational GTPase TypA | |||
4945 | glycosyltransferase family 9 protein | |||
4950 | M | M.HpyHP22ORF60P (99% identity) | ATTAAT | M.HpyBS26ORF4950P |
4955 | Hop family outer membrane protein HopJ/HopK | |||
5910 | 204 aa hypothetical protein | |||
5915 | M | M.HpyHP22ORF1015P (100% identity) | TCGA | M.HpyBS26ORF5915P |
5920 | exodeoxyribonuclease VII large subunit | |||
6740 | alpha-(1,2)-fucosyltransferase FutC1 | |||
6745 | M | M.HpyP007IV (93% identity) | GATC | M.HpyBS26ORF6745P |
6750 | 353 aa hypothetical protein | |||
6900 | sodium/proline symporter PutP | |||
6905 | M | M1.Hpyfe104ORF6710P (98% identity) | M1.HpyBS26ORF6905P | |
6910 | M | M1.HpyK052V (99% identity) | CCTC | M2.HpyBS26ORF6905P |
6915 | agmatine deiminase | |||
6960 | DNA methyltransferase | |||
6965 | R | HpyHP22ORF2065P (99% identity) | GANTC | HpyBS26ORF6970P |
6970 | M | M.HpyV008VI (99% identity) | GANTC | M.HpyBS26ORF6970P |
6975 | DNA methyltransferase | |||
6980 | 237 aa hypothetical protein | |||
6985 | RM | Hpyfe56ORF7190P (66% identity) | HpyBS26ORF6985P | |
6990 | carboxylating nicotinate-nucleotide | |||
7040 | copper response regulator transcription factor | |||
7045 | R | HpyT030ORF210P (95% identity) | GAAGA | HpyBS26ORF7050P |
7050 | M | M2.HpyMKF10ORF75P (97% identity) | GAAGA | M1.HpyBS26ORF7050P |
7055 | M | M2.HpyHP22ORF2140P (99% identity) | GAAGA | M2.HpyBS26ORF7050P |
7060 | site-specific DNA-methyltransferase | |||
7525 | 131 aa hypothetical protein | |||
7530 | R | HpySG18XIIIP (100% identity) | TGCA | HpyBS26ORF7535P |
7535 | M | M.HpyV005XIII (99% identity) | TGCA | M.HpyBS26ORF7535P |
7540 | 67 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyCRI2ORF7330P (95% identity) | GWCAY | M.HpyBS26ORF40P |
50 | R | Hpyfe73ORF40P (96% identity) | GWCAY | HpyBS26ORF40P |
55 | 713 aa hypothetical protein | |||
655 | type III restriction endonuclease subunit R | |||
660 | R | Hpy1100ORFPP (91% identity) | GCAAT | HpyBS26ORF665P |
665 | M | M.Hpy030ORF6650P (95% identity) | GCAAT | M.HpyBS26ORF665P |
670 | DNA/RNA non-specific endonuclease | |||
7055 | site-specific DNA-methyltransferase | |||
??? | M | M.Hpyfe65ORF6910P (94% identity) | M.HpyBS26ORF7060P | |
7070 | R | HpyT016ORF6775P (89% identity) | HpyBS26ORF7060P | |
7075 | rod shape-determining protein MreC | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
4175 | NAD(P)H-dependent oxidoreductase | |||
4180 | R | HpySG08GmrSD2P (95% identity) | HpyBS26GmrSD2P | |
4185 | tetratricopeptide repeat protein | |||
4780 | 50S ribosomal protein L9 | |||
4785 | R | HpyHP22GmrSD2P (98% identity) | HpyBS26GmrSDP | |
4790 | type I glutamate--ammonia ligase |