Roseobacter denitrificans OCh 114 |
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Putative Roseobacter denitrificans OCh 114 RM systems
Ref: Swingley,W.D. et al. J. Bacteriol. (2006) In press
REBASE ref # 9942
| Sequence length: | GenBank #: | |
| Chromosome: | 4,133,097 bp | CP000362 (NC_008209) |
| plasmid pTB3: | 16,575 bp | CP000466 (NC_008388) |
REBASE acronym: Rde
Org_num: 4458
All begin RD1_, RD1_C
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2232 | phage integrase family domain protein, putative | |||
| 2233 | M | M.Rde309II (100% identity) | M.RdeORF2233P | |
| 2234 | S | S.Rde309II (100% identity) | S.RdeORF2233P | |
| 2235 | R | Rde309IIP (100% identity) | RdeORF2233P | |
| 2236 | 33 aa hypothetical protein | |||
| 4052 | 33 aa hypothetical protein | |||
| 4053 | M | M.Rde309I (100% identity) | M.RdeORF4053P | |
| 4054 | S | S.Rde309I (100% identity) | S.RdeORF4053P | |
| 4055 | R | Rde309IP (100% identity) | RdeORF4053P | |
| 4056 | 33 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 297 | A/G-specific adenine glycosylase, putative | |||
| 298 | M | M.Rde309III (99% identity) | GANTC | M.RdeORF298P |
| 300 | ribonuclease HII | |||
| 1078 | modification methylase, putative | |||
| 1079 | M | M.Rde309IV (100% identity) | RGATCY | M.RdeORF1079P |
| 1080 | 226 aa hypothetical protein | |||
| plasmid pTB3 | ||||
| 12 | 365 aa hypothetical protein | |||
| 13 | R | SspTHAF37ORF20845P (98% identity) | GGCGCC | RdeORF14P |
| 14 | M | M.SspTHAF37ORF20845P (94% identity) | GGCGCC | M.RdeORF14P |
| 15 | partition protein ParB | |||