Escherichia coli AHM21C2872I |
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Putative Escherichia coli AHM21C2872I RM systems
Ref: He,W. et al. J Hazard Mater 446, 130725 (2023)
REBASE ref # 36917
| Sequence length: | GenBank #: | |
| Chromosome: | 4,882,044 bp | CP104629 |
| plasmid pHNAH212872: | 273,959 bp | CP104630 |
| plasmid pHNAH212872-2: | 100,861 bp | CP104632 |
| plasmid pHNAH212872-4: | 30,475 bp | CP104634 |
REBASE acronym: Eco2872
Org_num: 67966
All begin N5855_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13970 | AAA family ATPase | |||
| 13975 | S | S.EcosC41ORF22705P (100% identity) | CTANNNNNNCTTC | S.Eco2872ORF13980P |
| 13980 | M | M.EcosEC2ORF410P (100% identity) | CTANNNNNNCTTC | M.Eco2872ORF13980P |
| 13985 | R | EcoCS18FORF2130P (100% identity) | CTANNNNNNCTTC | Eco2872ORF13980P |
| 13990 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8320 | drug/metabolite exporter YedA | |||
| 8325 | V | V.EcosPA11DcmP (100% identity) | V.Eco2872DcmP | |
| 8330 | M | M.EcosPA11DcmP (100% identity) | CCWGG | M.Eco2872DcmP |
| 8335 | phosphohydrolase | |||
| 11940 | primase-like DNA-binding domain-containing | |||
| 11945 | R | Sens24184ORF5380P (100% identity) | C | Eco2872ORF11945P |
| 11950 | adhesin-like autotransporter YpjA/EhaD | |||
| 16440 | ribulose-phosphate 3-epimerase | |||
| 16445 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco2872DamP |
| 16450 | cell division protein DamX | |||
| 21530 | 100 aa hypothetical protein | |||
| 21535 | R | EcoW619ORFAP (96% identity) | Eco2872ORF21535P | |
| 21540 | HNH endonuclease | |||
| plasmid pHNAH212872 | ||||
| 23340 | 202 aa hypothetical protein | |||
| 23345 | M | M.YpsF1ORFBP (100% identity) | M.Eco2872ORF23345P | |
| 23350 | 48 aa hypothetical protein | |||
| 23985 | 55 aa hypothetical protein | |||
| 23990 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco2872ORF23990P |
| 23995 | thermonuclease family protein | |||
| 24695 | 277 aa hypothetical protein | |||
| 24700 | M | M.YpsF1ORFDP (100% identity) | GATC | M.Eco2872ORF24700P |
| 24705 | DNA-binding protein | |||
| plasmid pHNAH212872-2 | ||||
| 25940 | PerC family transcriptional regulator | |||
| 25945 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco2872ORF25945P |
| 25950 | LexA family transcriptional regulator | |||
| plasmid pHNAH212872-4 | ||||
| 26470 | 379 aa hypothetical protein | |||
| 26475 | R | EcoTIF10ORFCP (100% identity) | CCWGG | Eco2872ORF26480P |
| 26480 | M | M.EcoYPE3ORF18250P (100% identity) | M.Eco2872ORF26480P | |
| 26485 | 257 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21515 | SNF2-related protein | |||
| 21520 | M | M.EcoXH990ORF24545P (100% identity) | M.Eco2872ORF21520P | |
| 21525 | R | Ecos19ORF20250P (100% identity) | Eco2872ORF21520P | |
| 21530 | 100 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21720 | DUF1127 domain-containing protein | |||
| ??? | R | EcoXH990GmrSDP (100% identity) | Eco2872GmrSDP | |
| 21735 | endoribonuclease SymE | |||