Escherichia coli YZLc4-1 |
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Putative Escherichia coli YZLc4-1 RM systems
Ref: Yin,Y. unpublished
REBASE ref # 34560
| Sequence length: | GenBank #: | |
| Chromosome: | 4,875,625 bp | CP123260 |
| plasmid pYZLc4-1_138k: | 138,734 bp | CP123262 |
| plasmid pYZLc4-1_143k: | 143,631 bp | CP123261 |
| plasmid pYZLc4-1_94k: | 94,872 bp | CP123263 |
REBASE acronym: EcoLc41
Org_num: 68004
All begin N4697_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20235 | adenine/cytosine-specific restriction | |||
| 20240 | R | SflFF24ORF19705P (100% identity) | EcoLc41ORF20245P | |
| 20245 | M | M.SflFF24ORF19705P (100% identity) | M.EcoLc41ORF20245P | |
| 20250 | S | S.SflFF24ORF19705P (100% identity) | S.EcoLc41ORF20245P | |
| 20255 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 350 | osmoprotectant transport activator ProQ | |||
| 355 | M | M.SflFF24DndBP (100% identity) | M.EcoLc41DndBP | |
| 360 | DNA phosphorothioation system sulfurtransferase | |||
| 355 | DNA sulfur modification protein DndB | |||
| 360 | M | M.SflFF24DndCP (100% identity) | M.EcoLc41DndCP | |
| 365 | DNA sulfur modification protein DndD | |||
| 360 | DNA phosphorothioation system sulfurtransferase | |||
| 365 | M | M.SflFF24DndDP (100% identity) | M.EcoLc41DndDP | |
| 370 | DNA sulfur modification protein DndE | |||
| 365 | DNA sulfur modification protein DndD | |||
| 370 | M | M.SflFF24DndEP (100% identity) | M.EcoLc41DndEP | |
| 375 | DGQHR domain-containing protein | |||
| 385 | accessory gene regulator B family protein | |||
| 390 | R | EcotcmA3DptHP (100% identity) | EcoLc41DptHP | |
| 395 | DNA phosphorothioation-dependent restriction | |||
| 390 | DNA phosphorothioation-dependent restriction | |||
| 395 | R | SflFF24DptGP (100% identity) | EcoLc41DptGP | |
| 400 | DNA phosphorothioation-dependent restriction | |||
| 395 | DNA phosphorothioation-dependent restriction | |||
| 400 | R | SflFF24DptFP (100% identity) | EcoLc41DptFP | |
| 405 | integrase | |||
| 1915 | cell division protein DamX | |||
| 1920 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLc41DamP |
| 1925 | ribulose-phosphate 3-epimerase | |||
| 2470 | DUF2556 family protein | |||
| 2475 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoLc41ORF2475P |
| 2480 | DNA-binding transcriptional regulator Fis | |||
| 6205 | serine/threonine protein phosphatase | |||
| 6210 | M | M.Eco425ORF3351P (100% identity) | M.EcoLc41ORF6210P | |
| 6215 | PerC family transcriptional regulator | |||
| 9345 | HD domain-containing protein | |||
| 9350 | M | M.SspPIBDcmP (100% identity) | CCWGG | M.EcoLc41DcmP |
| 9355 | V | V.SflFF24DcmP (100% identity) | V.EcoLc41DcmP | |
| 9360 | drug/metabolite exporter YedA | |||
| 15460 | replication endonuclease | |||
| 15465 | M | M.EcoR70ORF6410P (99% identity) | GATC | M.EcoLc41ORF15465P |
| 15470 | DUF3850 domain-containing protein | |||
| 20470 | HNH endonuclease | |||
| 20475 | R | SflFF24ORF19925P (100% identity) | EcoLc41ORF20475P | |
| 20480 | peptidase | |||
| plasmid pYZLc4-1_138k | ||||
| 24970 | 73 aa hypothetical protein | |||
| 24975 | M | M.SflN92ORF24820P (100% identity) | M.EcoLc41ORF24975P | |
| 24980 | 101 aa hypothetical protein | |||
| plasmid pYZLc4-1_143k | ||||
| 24225 | 70 aa hypothetical protein | |||
| 24240 | M | M.Eco1ORF25320P (100% identity) | M.EcoLc41ORF24240P | |
| 24245 | recombination-associated protein RdgC | |||
| plasmid pYZLc4-1_94k | ||||
| 25255 | 103 aa hypothetical protein | |||
| 25260 | M | M.Sso8ORF23800P (99% identity) | M.EcoLc41ORF25260P | |
| 25265 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20255 | endoribonuclease SymE | |||
| 20260 | R | SflFF24McrBP (100% identity) | EcoLc41McrBP | |
| 20265 | R | SflFF24McrCP (100% identity) | EcoLc41McrCP | |