Escherichia coli C-SRM-3 |
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Putative Escherichia coli C-SRM-3 RM systems
Ref: Ju,X. unpublished
REBASE ref # 36776
| Sequence length: | GenBank #: | |
| Chromosome: | 4,799,348 bp | CP123197 |
| plasmid pCSRM-NDM13: | 110,016 bp | CP123198 |
| plasmid unnamed3: | 96,709 bp | CP123199 |
REBASE acronym: Eco3
Org_num: 67328
All begin PAE60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4400 | IS1 family transposase | |||
| 4405 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco3ORF4415P |
| 4410 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco3ORF4415P |
| 4415 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco3ORF4415P |
| 4420 | integrase core domain-containing protein | |||
| 8155 | 388 aa hypothetical protein | |||
| 8160 | M | M.EcoVEF10ORF18030P (100% identity) | M.Eco3ORF8160P | |
| 8165 | S | S1.EcoVEF10ORF18030P (100% identity) | S1.Eco3ORF8160P | |
| 8170 | YecA family protein | |||
| 8175 | cold shock domain-containing protein | |||
| 8180 | R | EcoE8ORF9595P (99% identity) | Eco3ORF8160P | |
| 8185 | SprT family zinc-dependent metalloprotease | |||
| plasmid unnamed3 | ||||
| 25580 | 3-phosphatase | |||
| 25090 | R | EcoLH09aORF24620P (100% identity) | Eco3ORF25100P | |
| 25095 | S | S.EcoGD31ORF25740P (68% identity) | S.Eco3ORF25100P | |
| 25100 | M | M.EcoLH09aORF24620P (100% identity) | M.Eco3ORF25100P | |
| 25105 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1210 | DUF2556 family protein | |||
| 1215 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco3ORF1215P |
| 1220 | DNA-binding transcriptional regulator Fis | |||
| 7805 | phosphohydrolase | |||
| 7810 | M | M.SflFF59DcmP (100% identity) | CCWGG | M.Eco3DcmP |
| 7815 | V | V.EcoEC98DcmP (99% identity) | V.Eco3DcmP | |
| 7820 | drug/metabolite exporter YedA | |||
| 18240 | phage lysis protein EssD | |||
| 18245 | M | M.Sdy9764ORFEP (100% identity) | M.Eco3ORF18245P | |
| 18250 | 67 aa hypothetical protein | |||
| 18280 | LexA family transcriptional regulator | |||
| 18285 | M | M.Sso30ORF925P (100% identity) | GATC | M.Eco3ORF18285P |
| 18290 | PerC family transcriptional regulator | |||
| 20135 | phage lysis protein EssD | |||
| 20140 | M | M.Sso63633ORF22290P (100% identity) | M.Eco3ORF20140P | |
| 20145 | TrmB family transcriptional regulator | |||
| 20175 | LexA family transcriptional regulator | |||
| 20180 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco3ORF20180P |
| 20185 | PerC family transcriptional regulator | |||
| 23910 | cell division protein DamX | |||
| 23915 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco3DamP |
| 23920 | ribulose-phosphate 3-epimerase | |||
| plasmid pCSRM-NDM13 | ||||
| 24855 | 73 aa hypothetical protein | |||
| 24860 | M | M.SspPIBORF23080P (100% identity) | M.Eco3ORF24860P | |
| 24865 | 103 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 25465 | recombination-associated protein RdgC | |||
| 25470 | M | M.EcoTHO010ORF40010P (100% identity) | M.Eco3ORF25470P | |
| 25485 | tellurite/colicin resistance protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11910 | isocitrate/isopropylmalate family dehydrogenase | |||
| 11915 | R | EmaE2C08McrCP (100% identity) | Eco3McrCP | |
| 11920 | R | EcoteDMcrBP (100% identity) | Eco3McrBP | |
| 11925 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13470 | replication endonuclease | |||
| 13475 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco3ORF13475P |
| 13480 | TraR/DksA family transcriptional regulator | |||