Escherichia coli KFS-D13 |
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Putative Escherichia coli KFS-D13 RM systems
Ref: Gomi,R. et al. unpublished
REBASE ref # 36781
| Sequence length: | GenBank #: | |
| Chromosome: | 5,022,943 bp | CP125029 |
| plasmid pKFS-D13_1: | 327,916 bp | CP125030 |
| plasmid pKFS-D13_2: | 99,904 bp | CP125028 |
REBASE acronym: EcoD13
Org_num: 67400
All begin QL144_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10630 | AAA family ATPase | |||
| 10635 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoD13ORF10640P |
| 10640 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoD13ORF10640P |
| 10645 | R | Sen33866ORF23510P (100% identity) | TGANNNNNNCTTC | EcoD13ORF10640P |
| 10650 | transposase | |||
| 19325 | endoribonuclease SymE | |||
| 19330 | S | S.SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | S.EcoD13ORF19335P |
| 19335 | M | M.SspS13ORF3945P (100% identity) | AAGNNNNNNNRTDCC | M.EcoD13ORF19335P |
| 19340 | R | SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | EcoD13ORF19335P |
| 19345 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1945 | TrmB family transcriptional regulator | |||
| 1950 | M | M.SflC32ORFBP (100% identity) | M.EcoD13ORF1950P | |
| 1970 | tellurite resistance protein | |||
| 5390 | drug/metabolite exporter YedA | |||
| 5395 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoD13DcmP |
| 5400 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoD13DcmP |
| 5405 | phosphohydrolase | |||
| 12815 | DNA-binding transcriptional regulator Fis | |||
| 12820 | M | M.SflC32ORFAP (100% identity) | ATGCAT | M.EcoD13ORF12820P |
| 12825 | DUF2556 family protein | |||
| 13415 | ribulose-phosphate 3-epimerase | |||
| 13420 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoD13DamP |
| 13425 | cell division protein DamX | |||
| plasmid pKFS-D13_1 | ||||
| 25910 | thermonuclease family protein | |||
| 25915 | M | M.YpsF1ORFCP (99% identity) | M.EcoD13ORF25915P | |
| 25920 | 55 aa hypothetical protein | |||
| 26180 | EAL domain-containing protein | |||
| 26185 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoD13ORF26190P |
| 26190 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoD13ORF26190P |
| 26195 | IS1 family transposase | |||
| 26880 | 284 aa hypothetical protein | |||
| 26885 | M | M.Ssp15303ORFEP (95% identity) | M.EcoD13ORF26885P | |
| 26890 | DNA-binding protein | |||
| 27010 | 202 aa hypothetical protein | |||
| 27015 | M | M.Ssp15303ORFDP (100% identity) | M.EcoD13ORF27015P | |
| 27020 | 106 aa hypothetical protein | |||
| plasmid pKFS-D13_2 | ||||
| 465 | 103 aa hypothetical protein | |||
| 470 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoD13ORF470P |
| 475 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19310 | 26 aa hypothetical protein | |||
| ??? | R | Ecos137GmrSDP (100% identity) | EcoD13GmrSDP | |
| 19325 | endoribonuclease SymE | |||