Escherichia coli ETEC1730 |
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Putative Escherichia coli ETEC1730 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 5,051,247 bp | CP122832 |
| plasmid unnamed1: | 91,199 bp | CP122833 |
| plasmid unnamed3: | 104,099 bp | CP122835 |
REBASE acronym: EcoC1730
Org_num: 67345
All begin QDY27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9815 | 388 aa hypothetical protein | |||
| 9820 | M | M.EcoC1718ORF10035P (100% identity) | M.EcoC1730ORF9820P | |
| 9825 | S | S1.EcoC1718ORF10035P (100% identity) | S1.EcoC1730ORF9820P | |
| 9830 | YecA family protein | |||
| 9835 | R | EcoC1718ORF10035P (100% identity) | EcoC1730ORF9820P | |
| 9840 | SprT family zinc-dependent metalloprotease | |||
| 22135 | IS3-like element IS3 family transposase | |||
| 22140 | S | S.EcoE89ORF20175P (100% identity) | S.EcoC1730ORF22140P | |
| 22145 | R | EcoYPE3ORF20380P (100% identity) | EcoC1730ORF22140P | |
| 22155 | NADPH-dependent aldehyde reductase Ahr | |||
| plasmid unnamed1 | ||||
| 25340 | type II toxin-antitoxin system Phd/YefM family | |||
| 25345 | M | M.EcoP136ORF28155P (100% identity) | M.EcoC1730ORF25345P | |
| 25350 | S | S.EcoP136ORF28155P (100% identity) | S.EcoC1730ORF25345P | |
| 25355 | R | EcoP136ORF28155P (100% identity) | EcoC1730ORF25345P | |
| 25360 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1865 | cell division protein DamX | |||
| 1870 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC1730DamP |
| 1875 | ribulose-phosphate 3-epimerase | |||
| 2520 | DUF2556 family protein | |||
| 2525 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoC1730ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 5585 | PerC family transcriptional regulator | |||
| 5590 | M | M.EcoT761ORF20590P (100% identity) | GATC | M.EcoC1730ORF5590P |
| 5595 | LexA family transcriptional regulator | |||
| 5620 | 95 aa hypothetical protein | |||
| 5625 | M | M.EcoC1718ORF5935P (100% identity) | M.EcoC1730ORF5625P | |
| 5630 | phage holin, lambda family | |||
| 5815 | 257 aa hypothetical protein | |||
| 5820 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoC1730ORF5820P |
| 5825 | R | EcoYPE3ORF18250P (100% identity) | CCWGG | EcoC1730ORF5820P |
| 5830 | primase-like DNA-binding domain-containing | |||
| 6235 | Com family DNA-binding transcriptional | |||
| 6240 | M | M.EcoEC180ORF6030P (100% identity) | M.EcoC1730ORF6240P | |
| 6245 | ribosome-associated translation inhibitor RaiA | |||
| 14020 | Shiga toxin Stx2e subunit A | |||
| 14040 | M | M.EcoC1718ORF14385P (100% identity) | M.EcoC1730ORF14040P | |
| 14045 | TrmB family transcriptional regulator | |||
| 19920 | tellurite resistance TerB family protein | |||
| 19935 | M | M.EcoC1718ORF20285P (100% identity) | M.EcoC1730ORF19935P | |
| 19940 | ISL3-like element ISKox3 family transposase | |||
| 21600 | phage lysis protein EssD | |||
| 21605 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC1730ORF21605P | |
| 21610 | 67 aa hypothetical protein | |||
| 22115 | HNH endonuclease | |||
| 22120 | R | SflFF17ORF19275P (100% identity) | EcoC1730ORF22120P | |
| 22125 | McrC family protein | |||
| plasmid unnamed3 | ||||
| 26740 | 73 aa hypothetical protein | |||
| 26745 | M | M.Sfl712783ORFFP (100% identity) | M.EcoC1730ORF26745P | |
| 26750 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22120 | HNH endonuclease | |||
| 22125 | R | EcoYPE3McrCP (100% identity) | EcoC1730McrCP | |
| 22130 | ATP-binding protein | |||