Escherichia coli AVS0171 |
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Putative Escherichia coli AVS0171 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,285,630 bp | CP124355 |
| plasmid pAVS0171-A: | 149,660 bp | CP124356 |
REBASE acronym: EcoS0171
Org_num: 67278
All begin QJB00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18510 | endoribonuclease SymE | |||
| 18515 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0171ORF18525P |
| 18520 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0171ORF18525P |
| 18525 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0171ORF18525P |
| 18530 | restriction endonuclease | |||
| 20335 | ash family protein | |||
| 20340 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0171ORF20345P |
| 20345 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0171ORF20345P |
| 20350 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0171ORF20345P |
| 20355 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2920 | TrmB family transcriptional regulator | |||
| 2925 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoS0171ORF2935P |
| 2930 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoS0171ORF2935P |
| 2935 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoS0171ORF2935P |
| 2940 | antiterminator Q family protein | |||
| 3810 | drug/metabolite exporter YedA | |||
| 3815 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0171DcmP |
| 3820 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0171DcmP |
| 3825 | phosphohydrolase | |||
| 7845 | 121 aa hypothetical protein | |||
| 7850 | R | Sso8033ORF3755P (99% identity) | CCWGG | EcoS0171ORF7855P |
| 7855 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoS0171ORF7855P |
| 7860 | 257 aa hypothetical protein | |||
| 7985 | phage lysis protein EssD | |||
| 7990 | M | M.EcosR6ORF7985P (100% identity) | M.EcoS0171ORF7990P | |
| 7995 | 95 aa hypothetical protein | |||
| 8030 | LexA family transcriptional regulator | |||
| 8035 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoS0171ORF8035P |
| 8040 | PerC family transcriptional regulator | |||
| 11820 | DNA-binding transcriptional regulator Fis | |||
| 11825 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0171ORF11825P |
| 11830 | DUF2556 family protein | |||
| 12420 | ribulose-phosphate 3-epimerase | |||
| 12425 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0171DamP |
| 12430 | cell division protein DamX | |||
| 16865 | conjugal transfer protein TraG N-terminal | |||
| 16870 | M | M.EcosS3ORF15775P (100% identity) | M.EcoS0171ORF16870P | |
| 16875 | R | EcosS3ORF15775P (100% identity) | EcoS0171ORF16870P | |
| 16880 | response regulator receiver domain | |||
| 18160 | helix-turn-helix domain-containing protein | |||
| 18165 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0171ORF18165P |
| 18170 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0171ORF18165P |
| 18175 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0171ORF18165P |
| 18180 | McrC family protein | |||
| 23825 | 71 aa hypothetical protein | |||
| 23830 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0171ORF23830P | |
| 23835 | helix-turn-helix transcriptional regulator | |||
| plasmid pAVS0171-A | ||||
| 26975 | 73 aa hypothetical protein | |||
| 26980 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS0171ORF26980P | |
| 26985 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18175 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 18180 | R | EcosS9McrCP (100% identity) | EcoS0171McrCP | |
| 18185 | R | EcosS3McrBP (100% identity) | EcoS0171McrBP | |
| 18190 | glycosyltransferase | |||
| 18525 | class I SAM-dependent DNA methyltransferase | |||
| 18530 | R | Ecou021MrrP (100% identity) | EcoS0171MrrP | |
| 18535 | BrnT family toxin | |||