Escherichia coli AVS0196 |
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Putative Escherichia coli AVS0196 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,129,351 bp | CP124442 |
| plasmid pAVS0196-A: | 82,934 bp | CP124443 |
REBASE acronym: EcoS0196
Org_num: 67280
All begin QJP94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18030 | endoribonuclease SymE | |||
| 18035 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0196ORF18045P |
| 18040 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0196ORF18045P |
| 18045 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0196ORF18045P |
| 18050 | restriction endonuclease | |||
| 19840 | ash family protein | |||
| 19845 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0196ORF19850P |
| 19850 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0196ORF19850P |
| 19855 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0196ORF19850P |
| 19860 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pAVS0196-A | ||||
| 25665 | IS1-like element IS1A family transposase | |||
| 25670 | R | KpnKPH1ORF27575P (82% identity) | CAAYNNNNNCTGG | EcoS0196ORF25680P |
| 25675 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoS0196ORF25680P |
| 25680 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoS0196ORF25680P |
| 25685 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3810 | drug/metabolite exporter YedA | |||
| 3815 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0196DcmP |
| 3820 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0196DcmP |
| 3825 | phosphohydrolase | |||
| 11585 | DNA-binding transcriptional regulator Fis | |||
| 11590 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0196ORF11590P |
| 11595 | DUF2556 family protein | |||
| 12195 | ribulose-phosphate 3-epimerase | |||
| 12200 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0196DamP |
| 12205 | cell division protein DamX | |||
| 15830 | PerC family transcriptional regulator | |||
| 15835 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoS0196ORF15835P |
| 15840 | LexA family transcriptional regulator | |||
| 17675 | helix-turn-helix domain-containing protein | |||
| 17680 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0196ORF17680P |
| 17685 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0196ORF17680P |
| 17690 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0196ORF17680P |
| 17695 | McrC family protein | |||
| 23035 | 71 aa hypothetical protein | |||
| 23040 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0196ORF23040P | |
| 23045 | helix-turn-helix transcriptional regulator | |||
| plasmid pAVS0196-A | ||||
| 25605 | 73 aa hypothetical protein | |||
| 25610 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0196ORF25610P |
| 25615 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17690 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17695 | R | EcosS9McrCP (100% identity) | EcoS0196McrCP | |
| 17700 | R | EcosS3McrBP (100% identity) | EcoS0196McrBP | |
| 17705 | glycosyltransferase | |||
| 18045 | class I SAM-dependent DNA methyltransferase | |||
| 18050 | R | Ecou021MrrP (100% identity) | EcoS0196MrrP | |
| 18055 | BrnT family toxin | |||