Escherichia coli AVS0543 |
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Putative Escherichia coli AVS0543 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 4,993,064 bp | CP124410 |
| plasmid pAVS0543-A: | 135,326 bp | CP124411 |
REBASE acronym: EcoS0543
Org_num: 67301
All begin QJP61_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16895 | endoribonuclease SymE | |||
| 16900 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0543ORF16910P |
| 16905 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0543ORF16910P |
| 16910 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0543ORF16910P |
| 16915 | restriction endonuclease | |||
| 18710 | ash family protein | |||
| 18715 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0543ORF18720P |
| 18720 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0543ORF18720P |
| 18725 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0543ORF18720P |
| 18730 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pAVS0543-A | ||||
| 25035 | IS1-like element IS1A family transposase | |||
| 25040 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoS0543ORF25050P |
| 25045 | S | S.SenBR076ORFFP (99% identity) | CAAYNNNNNCTGG | S1.EcoS0543ORF25050P |
| 25050 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoS0543ORF25050P |
| 25055 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3540 | drug/metabolite exporter YedA | |||
| 3545 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0543DcmP |
| 3550 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0543DcmP |
| 3555 | phosphohydrolase | |||
| 10710 | DNA-binding transcriptional regulator Fis | |||
| 10715 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0543ORF10715P |
| 10720 | DUF2556 family protein | |||
| 11320 | ribulose-phosphate 3-epimerase | |||
| 11325 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0543DamP |
| 11330 | cell division protein DamX | |||
| 16540 | helix-turn-helix domain-containing protein | |||
| 16545 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0543ORF16545P |
| 16550 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0543ORF16545P |
| 16555 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0543ORF16545P |
| 16560 | McrC family protein | |||
| 21940 | 71 aa hypothetical protein | |||
| 21945 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0543ORF21945P | |
| 21950 | helix-turn-helix transcriptional regulator | |||
| plasmid pAVS0543-A | ||||
| 24975 | 73 aa hypothetical protein | |||
| 24980 | M | M.UbapRSB107ORFAP (99% identity) | M.EcoS0543ORF24980P | |
| 24985 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16555 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16560 | R | EcosS9McrCP (100% identity) | EcoS0543McrCP | |
| 16565 | R | EcosS3McrBP (100% identity) | EcoS0543McrBP | |
| 16570 | glycosyltransferase | |||
| 16910 | class I SAM-dependent DNA methyltransferase | |||
| 16915 | R | Ecou021MrrP (100% identity) | EcoS0543MrrP | |
| 16920 | BrnT family toxin | |||