Pseudomonas species CW003PS |
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Putative Pseudomonas species CW003PS RM systems
Ref: Siew,S.W. et al. unpublished
REBASE ref # 36708
Complete sequence: 4,523,787 bp
GenBank #: CP123623
REBASE acronym: Psp3P5
Org_num: 67069
All begin QDX81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4585 | SNF2-related protein | |||
| 4590 | R | Pae85ORFDP (98% identity) | Psp3P5ORF4610P | |
| 4595 | McrC family protein | |||
| 4600 | AAA family ATPase | |||
| 4605 | S | S.Pst875ORF7305P (58% identity) | S.Psp3P5ORF4610P | |
| 4610 | M | M.Pps5344III (99% identity) | M.Psp3P5ORF4610P | |
| 4615 | 244 aa hypothetical protein | |||
| 8715 | DUF927 domain-containing protein | |||
| ??? | M | M.PaePa150ORF16660P (93% identity) | M.Psp3P5ORF8720P | |
| 8730 | S | S.Rag033ORF19275P (36% identity) | S.Psp3P5ORF8720P | |
| 8735 | ATP-binding protein | |||
| 8740 | R | PaePa150ORF16660P (97% identity) | Psp3P5ORF8720P | |
| 8745 | SprT family zinc-dependent metalloprotease | |||
| 10055 | ammonia channel protein | |||
| ??? | M | M.SstB010ORF1305P (6% identity) | M.Psp3P5ORFAP | |
| 10060 | S | S.PstTS44ORF14431P (62% identity) | S.Psp3P5ORFAP | |
| 10065 | R | Pae439ORF241P (99% identity) | Psp3P5ORFAP | |
| 10070 | 72 aa hypothetical protein | |||
| 11910 | TDT family transporter | |||
| 11915 | M | M.PspDV1ORF1905P (98% identity) | M.Psp3P5ORF11915P | |
| 11920 | DNA damage-inducible protein D | |||
| 11925 | S | S.BspCB82ORF38780P (34% identity) | S.Psp3P5ORF11915P | |
| 11930 | R | PspDV1ORF1905P (97% identity) | Psp3P5ORF11915P | |
| 11935 | transketolase | |||
| 13420 | recombinase family protein | |||
| 13425 | M | M.PbaEC28ORF19485P (100% identity) | M.Psp3P5ORF13425P | |
| 13430 | S | S.PbaEC28ORF19485P (100% identity) | S.Psp3P5ORF13425P | |
| 13435 | 307 aa hypothetical protein | |||
| 13440 | R | PbaEC28ORF19485P (100% identity) | Psp3P5ORF13425P | |
| 13445 | 263 aa hypothetical protein | |||
| 14675 | 238 aa hypothetical protein | |||
| ??? | M | M.AspI09ORF11350P (57% identity) | M.Psp3P5ORF14680P | |
| ??? | R | Eco562ORF25255P (91% identity) | Psp3P5ORF14680P | |
| 14700 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 610 | DNA topoisomerase III | |||
| 615 | M | M.Hsp770ORF12130P (100% identity) | M.Psp3P5ORF615P | |
| 620 | ATP-binding protein | |||
| 6975 | 112 aa hypothetical protein | |||
| 6980 | RM | Pfu414ORF25430P (60% identity) | Psp3P5ORF6980P | |
| 6985 | 213 aa hypothetical protein | |||
| 20315 | 185 aa hypothetical protein | |||
| 20320 | M | M.Ssp405ORF8290P (100% identity) | M.Psp3P5ORF20320P | |
| 20325 | DNA topoisomerase III | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9235 | DUF4391 domain-containing protein | |||
| ??? | M | M.Dpa2511ORFDP (36% identity) | M.Psp3P5ORF9240P | |
| 9250 | virulence RhuM family protein | |||
| 9255 | R | Hsp1143ORFEP (95% identity) | Psp3P5ORF9240P | |
| 9260 | 78 aa hypothetical protein | |||
| 15660 | recombinase family protein | |||
| 15665 | M | M.Hsp116ORF100333P (57% identity) | M.Psp3P5ORF15665AP | |
| 15670 | M | M.Pspye3ORF11610P (26% identity) | M.Psp3P5ORF15665BP | |
| 15675 | R | PspM17ORF3115P (93% identity) | Psp3P5ORF15665P | |
| 15680 | histidinol-phosphatase | |||
| 19290 | amidohydrolase family protein | |||
| 19295 | R | Pol4132ORF12860P (99% identity) | Psp3P5ORF19300P | |
| ??? | M | M.Psp112ZORF4320P (29% identity) | M.Psp3P5ORF19300P | |
| 19305 | IS200/IS605 family transposase | |||
| 19325 | transposase | |||
| ??? | M | M.PmoQMORFCP (57% identity) | M.Psp3P5ORF19330P | |
| 19340 | Fic family protein | |||
| 19345 | R | Tat31894ORFAP (51% identity) | Psp3P5ORF19330P | |
| 19350 | DUF3859 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4590 | type I restriction endonuclease subunit R | |||
| 4595 | R | Pps5344McrCP (100% identity) | Psp3P5McrCP | |
| 4600 | R | Pps5344McrBP (100% identity) | Psp3P5McrBP | |
| 4605 | restriction endonuclease subunit S | |||