Escherichia coli VE-F5 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli VE-F5 RM systems
Ref: Suzuki,M. et al. unpublished
REBASE ref # 36547
Complete sequence: 4,809,972 bp
GenBank #: AP027953
REBASE acronym: EcoVEF5
Org_num: 66552
All begin VEF5_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6560 | IS5 family transposase | |||
| 6570 | R | EcoWCTORF3505P (99% identity) | EcoVEF5ORF6590P | |
| 6580 | S | S.EcoWCTORF3505P (100% identity) | S.EcoVEF5ORF6590P | |
| 6590 | M | M.EcoWCTORF3505P (100% identity) | M.EcoVEF5ORF6590P | |
| 6600 | 290 aa hypothetical protein | |||
| 38680 | restriction methylase | |||
| 38690 | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | M.EcoVEF5ORF38690P |
| 38700 | S | S.SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | S.EcoVEF5ORF38690P |
| 38710 | R | SflN110ORF19045P (100% identity) | CCANNNNNNNNTGAA | EcoVEF5ORF38690P |
| 38720 | 51 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3200 | cell division protein DamX | |||
| 3210 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoVEF5DamP |
| 3220 | ribulose-phosphate 3-epimerase | |||
| 4410 | 144 aa hypothetical protein | |||
| 4420 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoVEF5ORF4420P |
| 4430 | DNA-binding protein Fis | |||
| 18050 | 231 aa hypothetical protein | |||
| 18060 | M | M.SflN92DcmP (100% identity) | CCWGG | M.EcoVEF5DcmP |
| 18070 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoVEF5DcmP |
| 18080 | inner membrane transporter YedA | |||
| 21910 | 140 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoVEF5ORF21920P | |
| 21930 | transposase | |||
| 25220 | 100 aa hypothetical protein | |||
| 25230 | M | M.Eco1036ORF6580P (100% identity) | M.EcoVEF5ORF25230P | |
| 25240 | 134 aa hypothetical protein | |||
| 35150 | 55 aa hypothetical protein | |||
| 35160 | M | M.Sbo812ORFAP (100% identity) | GATC | M.EcoVEF5ORF35160P |
| 35170 | 71 aa hypothetical protein | |||
| 38640 | 9-O-acetyl-N-acetylneuraminic acid | |||
| 38650 | R | SflSTLE4ORF19250P (100% identity) | EcoVEF5ORF38650P | |
| 38660 | mcrBC 5-methylcytosine restriction system | |||
| 39390 | transcriptional regulator | |||
| 39400 | R | EcoYJ3ORFFP (100% identity) | EcoVEF5ORF39400P | |
| 39410 | IS21 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 38650 | restriction endonuclease | |||
| 38660 | R | SflSTLE4McrCP (100% identity) | EcoVEF5McrCP | |
| 38670 | R | SflSTLE4McrBP (100% identity) | EcoVEF5McrBP | |
| 38680 | restriction methylase | |||