Escherichia coli RHB46-C05 |
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Putative Escherichia coli RHB46-C05 RM systems
Ref: Matlock,W. unpublished
REBASE ref # 36523
| Sequence length: | GenBank #: | |
| Chromosome: | 4,724,409 bp | CP098996 |
| plasmid unnamed1: | 169,374 bp | CP098997 |
| plasmid unnamed3: | 5,792 bp | CP098999 |
| plasmid unnamed4: | 3,887 bp | CP099000 |
REBASE acronym: Eco46C05
Org_num: 66527
All begin NFL43_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4880 | 291 aa hypothetical protein | |||
| 4885 | M | M.SenS12VPHORF19925P (41% identity) | CCACNNNNNNCAT | M.Eco46C05ORF4885AP |
| 4890 | IS3 family transposase | |||
| 4895 | M | M.SenS12VPHORF19925P (58% identity) | CCACNNNNNNCAT | M.Eco46C05ORF4885BP |
| 4900 | S | S.SenS12VPHORF19925P (100% identity) | CCACNNNNNNCAT | S.Eco46C05ORF4885P |
| 4905 | endonuclease NucS | |||
| 4910 | R | SenS12VPHORF19925P (100% identity) | CCACNNNNNNCAT | Eco46C05ORF4885P |
| 4915 | 56 aa hypothetical protein | |||
| 9270 | 388 aa hypothetical protein | |||
| 9275 | M | M.EcoEE7ORF9080P (100% identity) | M.Eco46C05ORF9275P | |
| 9280 | S | S1.Kpn337ORF25880P (75% identity) | S1.Eco46C05ORF9275P | |
| 9285 | YecA family protein | |||
| 9290 | R | Eco14721ORF14535P (100% identity) | Eco46C05ORF9275P | |
| 9295 | M48 family metallopeptidase | |||
| plasmid unnamed1 | ||||
| 23610 | 3-phosphatase | |||
| 23615 | R | Efe44C21ORF22625P (99% identity) | Eco46C05ORF23625P | |
| 23620 | S | S1.Efe44C21ORF22625P (66% identity) | S.Eco46C05ORF23625P | |
| 23625 | M | M.EcoF138ORF47810P (100% identity) | M.Eco46C05ORF23625P | |
| 23630 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1645 | cell division protein DamX | |||
| 1650 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco46C05DamP |
| 1655 | ribulose-phosphate 3-epimerase | |||
| 2220 | DUF2556 family protein | |||
| 2225 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco46C05ORF2225P |
| 2230 | DNA-binding transcriptional regulator Fis | |||
| 6780 | recombination protein NinB | |||
| 6785 | M | M.EcoPC1ORF21860P (100% identity) | GATC | M.Eco46C05ORF6785P |
| 6790 | NinE family protein | |||
| 11090 | DUF977 family protein | |||
| 11095 | M | M.Ecoi029ORF11125P (100% identity) | M.Eco46C05ORF11095P | |
| 11100 | 139 aa hypothetical protein | |||
| 13060 | DUF1317 domain-containing protein | |||
| 13065 | M | M.SenHNK130ORF1185P (98% identity) | M.Eco46C05ORF13065P | |
| 13070 | DUF4060 family protein | |||
| 15215 | replication endonuclease | |||
| 15220 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco46C05ORF15220P |
| 15225 | TraR/DksA family transcriptional regulator | |||
| 15870 | NinE family protein | |||
| 15875 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco46C05ORF15875P |
| 15880 | recombination protein NinB | |||
| 18460 | LexA family transcriptional regulator | |||
| 18465 | M | M.EcoKo009ORF3525P (100% identity) | GATC | M.Eco46C05ORF18465P |
| 18470 | PerC family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 23920 | XRE family transcriptional regulator | |||
| 23925 | R | EcoUKORF4603P (100% identity) | GCWGC | Eco46C05ORF23925P |
| 23930 | IS4-like element IS421 family transposase | |||
| plasmid unnamed3 | ||||
| 24080 | Rop family plasmid primer RNA-binding protein | |||
| 24085 | R | Efe33C07ORF24365P (100% identity) | Eco46C05ORF24055P | |
| 24055 | M | M.Efe33C07ORF24365P (100% identity) | M.Eco46C05ORF24055P | |
| plasmid unnamed4 | ||||
| 24095 | Rop family plasmid primer RNA-binding protein | |||
| 24100 | R | EcoSCU176ORF24540P (100% identity) | CCGCGG | Eco46C05ORF24090P |
| 24090 | M | M.EcoSCU176ORF24540P (96% identity) | CCGCGG | M.Eco46C05ORF24090P |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid unnamed1 | ||||
| 23740 | maturation control protein | |||
| 23745 | R | Sen68045ORF16165P (17% identity) | AGACC | Eco46C05ORF23760BP |
| 23750 | IS1 family transposase | |||
| 23755 | R | Sen68045ORF16165P (82% identity) | AGACC | Eco46C05ORF23760AP |
| 23760 | M | M.SenSL0052ORF25975P (100% identity) | AGACC | M.Eco46C05ORF23760P |
| 23765 | modulator protein | |||