Escherichia coli C012_chr |
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Putative Escherichia coli C012_chr RM systems
Ref: Wang,Z. et al. unpublished
REBASE ref # 36397
| Sequence length: | GenBank #: | |
| Chromosome: | 4,771,666 bp | CP119577 |
| plasmid pEC012-1: | 257,019 bp | CP119578 |
| plasmid pEC012-2: | 123,652 bp | CP119579 |
| plasmid pEC012-3: | 84,973 bp | CP119580 |
| plasmid pEC012-4: | 46,420 bp | CP119581 |
REBASE acronym: EcoCO12
Org_num: 65776
All begin P1J04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5640 | 72 aa hypothetical protein | |||
| 5645 | R | EcoW004ORF12170P (100% identity) | EcoCO12ORF5660P | |
| 5650 | S | S.Mmo48659ORF2735P (100% identity) | S.EcoCO12ORF5660P | |
| 5655 | AAA family ATPase | |||
| 5660 | M | M.Mmo48659ORF2735P (100% identity) | M.EcoCO12ORF5660P | |
| 5665 | transposase domain-containing protein | |||
| 19855 | 189 aa hypothetical protein | |||
| 19860 | R | EcoXH993ORF23720P (100% identity) | AAGNNNNNNNRTTTC | EcoCO12ORF19865P |
| 19865 | M | M.EcoZ503ORFCP (97% identity) | AAGNNNNNNNRTTTC | M.EcoCO12ORF19865P |
| 19870 | S | S.Ecoa005ORF2260P (100% identity) | AAGNNNNNNNRTTTC | S.EcoCO12ORF19865P |
| 19875 | endoribonuclease SymE | |||
| plasmid pEC012-4 | ||||
| 25815 | type II toxin-antitoxin system Phd/YefM family | |||
| 25820 | M | M.EcoLH09aORF24620P (100% identity) | M.EcoCO12ORF25820P | |
| 25825 | S | S.EcoLH09aORF24620P (100% identity) | S.EcoCO12ORF25820P | |
| 25830 | R | EcoLH09aORF24620P (100% identity) | EcoCO12ORF25820P | |
| 25835 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1820 | cell division protein DamX | |||
| 1825 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCO12DamP |
| 1830 | ribulose-phosphate 3-epimerase | |||
| 2350 | DUF2556 family protein | |||
| 2355 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoCO12ORF2355P |
| 2360 | DNA-binding transcriptional regulator Fis | |||
| 9130 | phosphohydrolase | |||
| 9135 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoCO12DcmP |
| 9140 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoCO12DcmP |
| 9145 | drug/metabolite exporter YedA | |||
| 12675 | tellurite/colicin resistance protein | |||
| 12690 | M | M.EcoSTEC383ORFDP (98% identity) | M.EcoCO12ORF12690P | |
| 12695 | TrmB family transcriptional regulator | |||
| 13560 | holin | |||
| 13575 | M | M.EcoFu019ORF10110P (100% identity) | M.EcoCO12ORF13575P | |
| 13580 | TrmB family transcriptional regulator | |||
| 20055 | HNH endonuclease | |||
| 20060 | R | EcoSTEC640ORF20895P (100% identity) | EcoCO12ORF20060P | |
| 20065 | AAA family ATPase | |||
| plasmid pEC012-1 | ||||
| 23060 | thermonuclease family protein | |||
| 23065 | M | M.YpsF1ORFCP (45% identity) | M.EcoCO12ORF23065P | |
| 23070 | IS6-like element IS26 family transposase | |||
| 23170 | 55 aa hypothetical protein | |||
| 23175 | M | M.YpsF1ORFCP (54% identity) | M.EcoCO12ORF23175P | |
| 23180 | IS6-like element IS26 family transposase | |||
| 23700 | 284 aa hypothetical protein | |||
| 23705 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoCO12ORF23705P |
| 23710 | DNA-binding protein | |||
| 23820 | 202 aa hypothetical protein | |||
| 23825 | M | M.YpsF1ORFBP (100% identity) | M.EcoCO12ORF23825P | |
| 23830 | 48 aa hypothetical protein | |||
| plasmid pEC012-3 | ||||
| 25185 | 73 aa hypothetical protein | |||
| 25180 | M | M.SflN92ORF24820P (99% identity) | M.EcoCO12ORF25180P | |
| 25175 | 101 aa hypothetical protein | |||
| plasmid pEC012-4 | ||||
| 27875 | 103 aa hypothetical protein | |||
| 27880 | M | M.Kpn1026ORFJP (99% identity) | M.EcoCO12ORF27880P | |
| 27885 | 73 aa hypothetical protein | |||
| 25940 | 85 aa hypothetical protein | |||
| 25945 | M | M.Sen0904ORF23445P (99% identity) | M.EcoCO12ORF25945P | |
| 25950 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20060 | HNH endonuclease | |||
| 20065 | R | SflN101McrBP (100% identity) | EcoCO12McrBP | |
| 20070 | R | SflN101McrCP (100% identity) | EcoCO12McrCP | |
| 20075 | 128 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pEC012-2 | ||||
| 24900 | 269 aa hypothetical protein | |||
| 24905 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoCO12ORF24905P |
| 24910 | 76 aa hypothetical protein | |||