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Putative Rhodobacter capsulatus 37b4 RM systems
Ref: Binte Alim,N.T. et al. unpublished
REBASE ref # 36417
Complete sequence: 3,912,233 bp
GenBank #: CP119563
REBASE acronym: Rca37b4
Org_num: 65904
All begin PUH89_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
5360 | 194 aa hypothetical protein | |||
5365 | R | Hba13ORF10095P (95% identity) | Rca37b4ORF5380P | |
5370 | virulence RhuM family protein | |||
5375 | S | S.PspM18ORF7250P (54% identity) | S.Rca37b4ORF5380P | |
5380 | M | M.PspM18ORF7250P (89% identity) | M.Rca37b4ORF5380P | |
5385 | 229 aa hypothetical protein | |||
5610 | SprT family zinc-dependent metalloprotease | |||
5615 | R | PspAK26ORF6575P (90% identity) | Rca37b4ORF5625P | |
5620 | S | S.TsuHLORF1779P (40% identity) | S.Rca37b4ORF5625P | |
5625 | M | M.RspAB29ORF9155P (90% identity) | M.Rca37b4ORF5625P | |
5630 | 229 aa hypothetical protein | |||
5730 | 43 aa hypothetical protein | |||
5735 | M | M.AviF25ORF4605P (36% identity) | M.Rca37b4ORF5735AP | |
5740 | IS3 family transposase | |||
5745 | M | M.Pye20ORF20650P (46% identity) | M.Rca37b4ORF5735BP | |
5750 | 240 aa hypothetical protein | |||
12075 | type II toxin-antitoxin system Phd/YefM family | |||
12080 | R | BspBE17ORF8645P (96% identity) | Rca37b4ORF12095P | |
12085 | S | S.BspDS20ORF16910P (59% identity) | S.Rca37b4ORF12095P | |
12090 | AAA family ATPase | |||
??? | M | M.BspBE17ORF8645P (95% identity) | M.Rca37b4ORF12095P | |
12105 | 125 aa hypothetical protein | |||
13675 | 364 aa hypothetical protein | |||
13680 | M | M.RcaY262ORF11125P (95% identity) | M.Rca37b4ORF13680P | |
13685 | S | S.Ssp101ORF7145P (30% identity) | S.Rca37b4ORF13680P | |
13690 | R | RcaYW2ORF4480P (97% identity) | Rca37b4ORF13680P | |
13695 | 100 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1050 | MarR family winged helix-turn-helix | |||
1055 | M | M.RcaB41ORF15980P (100% identity) | GANTC | M.Rca37b4ORF1055P |
1060 | ribonuclease HII | |||
5035 | 256 aa hypothetical protein | |||
5040 | M | M1.Rba558ORF5180P (93% identity) | M1.Rca37b4ORF5040P | |
5045 | M | M1.RspAB25ORF20900P (96% identity) | M2.Rca37b4ORF5040P | |
5050 | helix-turn-helix domain-containing protein | |||
5110 | 221 aa hypothetical protein | |||
??? | M | M.Pfi22803ORF11095P (88% identity) | M.Rca37b4ORFAP | |
5120 | helix-turn-helix domain-containing protein | |||
5340 | DUF3489 domain-containing protein | |||
5345 | M | M1.Pye20ORF22550P (92% identity) | M1.Rca37b4ORF5345P | |
5350 | M | M2.PamBM109ORFDP (96% identity) | M2.Rca37b4ORF5345P | |
5355 | DUF4868 domain-containing protein | |||
5385 | 229 aa hypothetical protein | |||
??? | M | M.RanZS228ORFLP (66% identity) | M.Rca37b4ORF5390P | |
5400 | helix-turn-helix domain-containing protein | |||
5590 | 71 aa hypothetical protein | |||
5595 | M | M2.RspAB25ORF20900P (92% identity) | M1.Rca37b4ORF5595P | |
5600 | M | M2.Rca37b4ORF5040P (96% identity) | M2.Rca37b4ORF5595P | |
5605 | 305 aa hypothetical protein | |||
5680 | 324 aa hypothetical protein | |||
5685 | M | M.Mlo7ORF27165P (53% identity) | M.Rca37b4ORF5685P | |
5690 | recombinase family protein | |||
8530 | type II toxin-antitoxin system RelE/ParE family | |||
8535 | M | M.RcaA12ORF8225P (89% identity) | M1.Rca37b4ORF8535P | |
8540 | DpnII family type II restriction endonuclease | |||
8545 | M | M.Rca37b4ORF14105P (97% identity) | M2.Rca37b4ORF8535P | |
8550 | 115 aa hypothetical protein | |||
12110 | 70 aa hypothetical protein | |||
12115 | M | M2.Pye20ORF22550P (96% identity) | M1.Rca37b4ORF12115P | |
12120 | M | M2.RanZS228ORFQP (92% identity) | M2.Rca37b4ORF12115P | |
12125 | 98 aa hypothetical protein | |||
14100 | glycine zipper family protein | |||
14105 | M | M.RcaYW1ORF260P (99% identity) | M.Rca37b4ORF14105P | |
14110 | DDE-type integrase/transposase/recombinase | |||
18065 | WYL domain-containing protein | |||
18070 | RM | SspLF16ORFAP (71% identity) | Rca37b4ORF18070P | |
18075 | DEAD/DEAH box helicase family protein | |||
18220 | IS110 family transposase | |||
18225 | M | M.PyeTT13ORF13725P (37% identity) | M.Rca37b4ORF18225P | |
18230 | ParB N-terminal domain-containing protein | |||
18225 | DNA cytosine methyltransferase | |||
18230 | M | M.PyeTT13ORF13730P (96% identity) | M.Rca37b4ORF18230P | |
18235 | DUF6362 family protein | |||
18385 | N-6 DNA methylase | |||
18390 | M | M.RspTHAF9ORF15535P (78% identity) | M.Rca37b4ORF18390P | |
18395 | HNH endonuclease | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
13825 | IS256 family transposase | |||
13830 | R | Rma10ORF10330P (74% identity) | Rca37b4ORF13830P | |
13835 | class I SAM-dependent methyltransferase |