Escherichia coli ZYB62 |
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Putative Escherichia coli ZYB62 RM systems
Ref: Wang,W. unpublished
REBASE ref # 25196
| Sequence length: | GenBank #: | |
| Chromosome: | 4,855,674 bp | CP074366 |
| plasmid unnamed1: | 226,158 bp | CP074367 |
| plasmid unnamed2: | 87,829 bp | CP074368 |
| plasmid unnamed3: | 93,492 bp | CP074369 |
REBASE acronym: EcoZYB62
Org_num: 65813
All begin KG092_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5955 | IS1 family transposase | |||
| 5960 | R | Ror24150ORF17255P (100% identity) | GGANNNNNCTC | EcoZYB62ORF5970P |
| 5965 | S | S.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | S.EcoZYB62ORF5970P |
| 5970 | M | M.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | M.EcoZYB62ORF5970P |
| 5975 | ParB N-terminal domain-containing protein | |||
| 9400 | 176 aa hypothetical protein | |||
| 9405 | M | M.EcoLD931ORF12950P (100% identity) | CAACNNNNNCTT | M.EcoZYB62ORF9405P |
| 9410 | S | S.EcoLD931ORF12950P (100% identity) | CAACNNNNNCTT | S1.EcoZYB62ORF9405P |
| 9415 | YecA family protein | |||
| 9420 | R | EcoLD931ORF12950P (100% identity) | CAACNNNNNCTT | EcoZYB62ORF9405P |
| 9425 | M48 family metallopeptidase | |||
| 14095 | 58 aa hypothetical protein | |||
| 14100 | M | M.Ecos1613ORF5225P (100% identity) | CCAYNNNNNGTTY | M.EcoZYB62ORF14100P |
| 14105 | S | S.Ecos1613ORF5225P (100% identity) | CCAYNNNNNGTTY | S.EcoZYB62ORF14100P |
| 14110 | DUF4433 domain-containing protein | |||
| 14115 | macro domain-containing protein | |||
| 14120 | R | EcoVL08ORF9605P (100% identity) | CCAYNNNNNGTTY | EcoZYB62ORF14100P |
| 14125 | M48 family metallopeptidase | |||
| 19895 | adenine/cytosine-specific restriction | |||
| 19900 | R | Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | EcoZYB62ORF19905P |
| 19905 | M | M.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | M.EcoZYB62ORF19905P |
| 19910 | S | S.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | S.EcoZYB62ORF19905P |
| 19915 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1690 | cell division protein DamX | |||
| 1695 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoZYB62DamP |
| 1700 | ribulose-phosphate 3-epimerase | |||
| 2245 | DUF2556 family protein | |||
| 2250 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoZYB62ORF2250P |
| 2255 | DNA-binding transcriptional regulator Fis | |||
| 9110 | phosphohydrolase | |||
| 9115 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoZYB62DcmP |
| 9120 | V | V.EcoKE46DcmP (100% identity) | V.EcoZYB62DcmP | |
| 9125 | drug/metabolite exporter YedA | |||
| plasmid unnamed1 | ||||
| 23370 | 284 aa hypothetical protein | |||
| 23375 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoZYB62ORF23375P |
| 23380 | DNA-binding protein | |||
| 23485 | 202 aa hypothetical protein | |||
| 23490 | M | M.YpsF1ORFBP (100% identity) | M.EcoZYB62ORF23490P | |
| 23495 | 48 aa hypothetical protein | |||
| 24080 | thermonuclease family protein | |||
| 24085 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoZYB62ORF24085P |
| 24090 | 55 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 24620 | DUF1380 domain-containing protein | |||
| 24625 | M | M.SflN92ORF24820P (66% identity) | M.EcoZYB62ORF24625P | |
| 24630 | 101 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 24955 | recombination-associated protein RdgC | |||
| 24960 | M | M.EcoW046ORF23555P (100% identity) | M.EcoZYB62ORF24960P | |
| 24965 | 85 aa hypothetical protein | |||