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Putative Helicobacter pylori HPAG1 RM systems
Ref: Oh,J.D. et al. Proc. Natl. Acad. Sci. U.S.A. (2006) In press
REBASE ref # 9529
Complete sequence: 1,596,366 bp
GenBank #: CP000241 (NC_008086)
REBASE acronym: HpyH
Org_num: 4450
All begin HPAG1_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
436 | polyphosphate kinase | |||
437 | S | S.HpyC026ORF5480P (98% identity) | S.HpyHORF438P | |
438 | M | M.HpyBGR10ORF2130P (96% identity) | M.HpyHORF438P | |
??? | R | HpyBGR3IIIP (88% identity) | HpyHORF438P | |
441 | 631 aa hypothetical protein | |||
774 | outer membrane protein HofF | |||
775 | S | S.HpyPO107ORF3870P (95% identity) | S.HpyHORF775P | |
776 | cadmium-transporting ATPase | |||
830 | thiamine phosphate pyrophosphorylase | |||
831 | R | HpyCA26XIVP (92% identity) | HpyHORF833P | |
832 | S | S.HpyV009ORF2865P (75% identity) | S.HpyHORF833P | |
833 | M | M.HpyU123XV (93% identity) | M.HpyHORF833P | |
834 | 228 aa conserved hypothetical integral membrane | |||
1461 | 303 aa hypothetical protein | |||
1462 | S | S.HpyPE102ORF3825P (97% identity) | S.HpyHORF1464P | |
1463 | 258 aa hypothetical protein | |||
??? | M | M.HpyNP08ORF6720P (93% identity) | M.HpyHORF1464P | |
1466 | R | HpyIS11ORF7335P (94% identity) | HpyHORF1464P | |
1467 | 76 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
45 | 330 aa hypothetical protein | |||
46 | M | M1.HpyF013VII (98% identity) | CCTC | M1.HpyHORF46P |
47 | M | M2.HpySP103VP (97% identity) | CCTC | M2.HpyHORF46P |
48 | type II DNA modification enzyme | |||
47 | cytosine specific DNA methyltransferase | |||
48 | M | M.HpySP315XI (99% identity) | GTSAC | M.HpyHORF48P |
??? | R | HpyC005IIIP (99% identity) | GTSAC | HpyHORF48P |
51 | adenine/cytosine DNA methyltransferase | |||
92 | HrgA protein | |||
93 | M | M.HpyC102VI (97% identity) | GATC | M.HpyHORF93P |
94 | alpha-1,2-fucosyltransferase | |||
261 | exonuclease VII, large subunit | |||
262 | M | M.HpyIS6XI (98% identity) | TCGA | M.HpyHORF262P |
263 | 152 aa hypothetical protein | |||
263 | 152 aa hypothetical protein | |||
264 | R | HpyKH1ORFJP (90% identity) | CCGG | HpyHORF264P |
265 | M | M.HpyZ011III (99% identity) | CCGG | M.HpyHORF264P |
266 | ATP-dependent protease binding subunit/heat | |||
312 | 293 aa hypothetical protein | |||
313 | R | HpySW16XIP (99% identity) | CTNAG | HpyHI |
314 | M | M.HpyPE110VIII (99% identity) | CTNAG | M.HpyHI |
315 | 128 aa hypothetical protein | |||
454 | outer membrane protein HopJ | |||
455 | M | M.HpyLI23V (97% identity) | ATTAAT | M.HpyHORF455P |
456 | DD-heptosyltransferase | |||
457 | GTP-binding protein | |||
458 | M | M.HpyI012IV (98% identity) | ACNGT | M.HpyHORF458P |
459 | R | HpyKH30ORFYP (89% identity) | ACNGT | HpyHORF458P |
460 | type II DNA modification enzyme | |||
459 | type II restriction endonuclease | |||
460 | M | M.HpySP401ORF2600P (88% identity) | ACGT | M.HpyHORF460P |
461 | catalase like protein | |||
477 | DNA gyrase subunit B | |||
478 | M | M.HpySW24VIII (99% identity) | GTAC | M.HpyHII |
479 | R | HpyLI24XVIIP (98% identity) | GTAC | HpyHII |
480 | outer membrane protein | |||
651 | glycerol-3-phosphate dehydrogenase | |||
??? | RM | HpyLI12ORF3175P (92% identity) | HpyHORF652P | |
654 | outer membrane protein HorF | |||
671 | 276 aa hypothetical protein | |||
672 | M | M.HpyR09IV (100% identity) | CCNNGG | M.HpyHORF672P |
673 | R | HpySW36VIP (99% identity) | CCNNGG | HpyHORF672P |
674 | 119 aa hypothetical protein | |||
890 | flagellar hook protein | |||
891 | R | Hpy8I (91% identity) | GTNNAC | HpyHORF892P |
892 | M | M.HpyT016XII (98% identity) | GTNNAC | M.HpyHORF892P |
893 | rep helicase, single-stranded DNA-dependent | |||
1022 | biotin carboxylase | |||
??? | M | M.HpyMM12XII (99% identity) | TCNNGA | M.HpyHORF1023P |
??? | R | HpyCOL10XIP (99% identity) | TCNNGA | HpyHORF1023P |
1027 | 197 aa hypothetical protein | |||
1058 | 144 aa hypothetical protein | |||
1059 | M | M.HpyBG6XIII (95% identity) | GCGC | M.HpyHORF1059P |
1060 | flgM protein | |||
1148 | 222 aa hypothetical protein | |||
1149 | M | M.HpySW28I (100% identity) | CATG | M.HpyHORF1149P |
??? | R | HpyCA8IP (99% identity) | CATG | HpyHORF1149P |
1152 | serine acetyltransferase | |||
1297 | carboxyl-terminal protease | |||
??? | R | HpySW24IVP (100% identity) | GANTC | HpyHORF1300P |
1300 | M | M.HpySW24IV (99% identity) | GANTC | M.HpyHORF1300P |
1301 | adenine specific DNA methyltransferase | |||
1300 | adenine specific DNA methyltransferase | |||
1301 | RM | HpySP309ORF5340P (86% identity) | HpyHORF1301P | |
1302 | nicotinate-nucleotide pyrophosphorylase | |||
1394 | type III R-M system restriction enzyme | |||
1395 | RM | HpyL025XVIII (92% identity) | HpyHORF1395P | |
1396 | 30 aa hypothetical protein | |||
1411 | outer membrane protein HopK | |||
1412 | R | HpySW12ORF7335P (98% identity) | CCATC | HpyHORF1413P |
1413 | M | M1.HpySW14VIII (99% identity) | CCATC | M2.HpyHORF1413P |
1414 | M | M2.HpySW07VIII (98% identity) | GATGG | M1.HpyHORF1413P |
1415 | 355 aa hypothetical protein | |||
1440 | 191 aa hypothetical protein | |||
??? | RM | HpyPO12ORF7345P (98% identity) | HpyHORF1441P | |
1444 | S | S.HpyGE20VI (69% identity) | S.HpyHORF1441P | |
1445 | DNA polymerase I | |||
1484 | 68 aa hypothetical protein | |||
1485 | M | M.HpyU201XIII (98% identity) | TGCA | M.HpyHORF1485P |
1486 | R | HpyLI21XIIP (99% identity) | TGCA | HpyHORF1485P |
1487 | ubiquinol cytochrome c oxidoreductase, | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1312 | response regulator | |||
??? | M | M.HpyPOR110ORF7585P (94% identity) | M.HpyHORF1313P | |
??? | R | HpyL034ORF6605P (94% identity) | HpyHORF1313P | |
1317 | rod shape-determining protein | |||
1327 | endonuclease G | |||
1328 | M | M.HpyJ016ORF6700P (96% identity) | M.HpyHORF1328P | |
1329 | R | HpyIS2ORF6540P (93% identity) | HpyHORF1328P | |
1330 | biotin synthetase | |||
1392 | DNA recombinase | |||
1393 | M | M.HpyBGR5ORF7360P (97% identity) | M.HpyHORF1393P | |
1394 | R | HpyP108ORF6810P (95% identity) | HpyHORF1393P | |
1395 | type IIS restriction-modification protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
486 | glutamine synthetase | |||
487 | R | HpyP008GmrSDP (86% identity) | HpyHGmrSDP | |
488 | ribosomal protein L9 |