Xanthomonas campestris pv. campestris 12112 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Xanthomonas campestris pv. campestris 12112 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
| Sequence length: | GenBank #: | |
| Chromosome: | 5,035,393 bp | CP066939 |
| plasmid unnamed: | 146,503 bp | CP066940 |
REBASE acronym: Xca12112
Org_num: 65182
All begin JH286_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6125 | M48 family metallopeptidase | |||
| 6130 | R | Xca8290ORF6370P (100% identity) | CAAGNNNNNCTTA | Xca12112ORF6145P |
| 6135 | S | S.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | S.Xca12112ORF6145P |
| 6140 | damage-inducible protein D | |||
| 6145 | M | M.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | M.Xca12112ORF6145P |
| 6150 | restriction endonuclease subunit S | |||
| 15575 | 98 aa hypothetical protein | |||
| 15580 | R | XcaJXORFGP (89% identity) | Xca12112ORF15595P | |
| 15585 | S | S.XcaJXORFGP (84% identity) | S.Xca12112ORF15595P | |
| 15590 | virulence RhuM family protein | |||
| 15595 | M | M.Xcacc2ORF16555P (100% identity) | M.Xca12112ORF15595P | |
| 15600 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5265 | BREX system P-loop protein BrxC | |||
| 5270 | RM | Xca8290ORF16595P (65% identity) | Xca12112ORF5270AP | |
| 5275 | IS5-like element IS1478 family transposase | |||
| 5280 | RM | Xca8290ORF16595P (31% identity) | Xca12112ORF5270BP | |
| 5285 | BREX-1 system phosphatase PglZ type A | |||
| 12800 | 320 aa hypothetical protein | |||
| 12805 | R | Xci7119ORF8295P (100% identity) | CTCGAG | Xca12112ORF12810P |
| 12810 | M | M.Xca10103ORF10250P (99% identity) | M.Xca12112ORF12810P | |
| 12815 | IS3 family transposase | |||
| plasmid unnamed | ||||
| 22195 | 265 aa hypothetical protein | |||
| 22200 | M | M.Xca12049ORF22715P (100% identity) | M.Xca12112ORF22200P | |
| 22205 | 214 aa hypothetical protein | |||
| 22250 | recombination-associated protein RdgC | |||
| 22255 | M | M.Xca12049ORF22770P (100% identity) | M.Xca12112ORF22255P | |
| 22260 | 192 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20645 | alpha/beta fold hydrolase | |||
| 20650 | R | Xcacc2ORF915P (99% identity) | GCCAGG | Xca12112ORF20655P |
| 20655 | M | M.Xcacc2ORF915P (100% identity) | GCCAGG | M.Xca12112ORF20655P |
| 20660 | Fic family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7010 | 71 aa hypothetical protein | |||
| 7015 | R | Xcacc2McrBP (100% identity) | Xca12112McrBP | |
| 7020 | R | XcaCN13aMcrCP (100% identity) | Xca12112McrCP | |
| 7025 | sensor histidine kinase | |||