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Putative Xanthomonas campestris pv. campestris 10090 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
Complete sequence: 5,120,965 bp
GenBank #: CP066936
REBASE acronym: Xca10090
Org_num: 65578
All begin JH310_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
6010 | M48 family metallopeptidase | |||
6015 | R | XcaXY11ORF6160P (100% identity) | CAAGNNNNNCTTA | Xca10090ORF6030P |
6020 | S | S2.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | S.Xca10090ORF6030P |
6025 | damage-inducible protein D | |||
6030 | M | M.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | M.Xca10090ORF6030P |
6035 | restriction endonuclease subunit S | |||
16375 | 98 aa hypothetical protein | |||
16380 | R | XcaTJORFEP (89% identity) | Xca10090ORF16395P | |
16385 | S | S.XcaTJORFEP (74% identity) | S.Xca10090ORF16395P | |
16390 | virulence RhuM family protein | |||
16395 | M | M.XcaTJORFEP (100% identity) | M.Xca10090ORF16395P | |
16400 | restriction endonuclease | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
10515 | AAA family ATPase | |||
10520 | M | M.XcaYORFEP (48% identity) | M.Xca10090ORF10520P | |
10525 | DNA topoisomerase III | |||
10575 | IS3-like element IS476 family transposase | |||
10580 | RM | XcaSB80ORF10635P (100% identity) | Xca10090ORF10580P | |
10585 | DEAD/DEAH box helicase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
16395 | SAM-dependent DNA methyltransferase | |||
16400 | R | XcaYMrrP (100% identity) | Xca10090MrrP | |
16405 | type II toxin-antitoxin system RelE/ParE family | |||
22160 | RluA family pseudouridine synthase | |||
22165 | R | XcaYMrr2P (90% identity) | Xca10090Mrr2P | |
22170 | topoisomerase DNA-binding C4 zinc finger |