Escherichia coli ATCC 25922 |
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Putative Escherichia coli ATCC 25922 RM systems
Ref: Johnson,J.D. et al. unpublished
REBASE ref # 36142
| Sequence length: | GenBank #: | |
| Chromosome: | 5,132,219 bp | CP117235 |
| plasmid pATCC25922_4: | 48,488 bp | CP117232 |
REBASE acronym: Eco25922a
Org_num: 64893
All begin PQQ28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21380 | restriction endonuclease | |||
| 21385 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco25922aORF21385P |
| 21390 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco25922aORF21385P |
| 21395 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco25922aORF21385P |
| 21400 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2185 | cell division protein DamX | |||
| 2190 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco25922aDamP |
| 2195 | ribulose-phosphate 3-epimerase | |||
| 2785 | DUF2556 family protein | |||
| 2790 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco25922aORF2790P |
| 2795 | DNA-binding transcriptional regulator Fis | |||
| 21740 | McrC family protein | |||
| 21745 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco25922aORF21750P |
| 21750 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco25922aORF21750P |
| 21755 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco25922aORF21750P |
| 21760 | helix-turn-helix domain-containing protein | |||
| plasmid pATCC25922_4 | ||||
| 155 | 92 aa hypothetical protein | |||
| 165 | M | M.EcoZLWTORF24570P (100% identity) | GATC | M.Eco25922aORF165P |
| 170 | 89 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21375 | BrnT family toxin | |||
| 21380 | R | Ecou021MrrP (100% identity) | Eco25922aMrrP | |
| 21385 | class I SAM-dependent DNA methyltransferase | |||
| 21735 | AAA family ATPase | |||
| 21740 | R | EcosS9McrCP (100% identity) | Eco25922aMcrCP | |
| 21745 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14415 | NinE family protein | |||
| 14420 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco25922aORF14420P |
| 14425 | recombination protein NinB | |||