Fusobacterium nucleatum JD-Fn1 |
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Putative Fusobacterium nucleatum JD-Fn1 RM systems
Ref: Wang,Y. et al. Front Microbiol 13, 945315 (2022)
REBASE ref # 36050
Complete sequence: 2,470,422 bp
GenBank #: CP116231
REBASE acronym: FnuFn1
Org_num: 64571
All begin PGW91_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4490 | metalloregulator ArsR/SmtB family transcription | |||
| 4495 | R | Fnu051IP (98% identity) | FnuFn1ORF4495P | |
| 4500 | tyrosine-type recombinase/integrase | |||
| 4505 | S | S3.FhwF174ORF6185P (95% identity) | S.FnuFn1ORF4495P | |
| 4510 | 253 aa hypothetical protein | |||
| 7880 | TonB-dependent receptor | |||
| 7885 | S | S.Fnu2517I (98% identity) | GTANNNNNNNCTC | S1.FnuFn1ORF7890P |
| 7890 | M | M.FnuM1260II (98% identity) | M.FnuFn1ORF7890P | |
| 7895 | R | Fnu2446IP (99% identity) | FnuFn1ORF7890P | |
| 7900 | RidA family protein | |||
| 7905 | DUF3427 domain-containing protein | |||
| 7910 | 95 aa hypothetical protein | |||
| 7915 | S | S2.FnuM3127IIP (93% identity) | S2.FnuFn1ORF7890P | |
| 7920 | DEAD/DEAH box helicase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3575 | DUF6161 domain-containing protein | |||
| 3580 | RM | FnuM1279ORF5380P (94% identity) | FnuFn1ORF3580P | |
| 3585 | DNA binding domain-containing protein | |||
| 5920 | bifunctional pyr operon transcriptional | |||
| 5925 | RM | FnuSB14ORF4250P (79% identity) | FnuFn1ORF5930P | |
| 5930 | M | M.FnuSB14ORF4245P (94% identity) | M.FnuFn1ORF5930P | |
| 5935 | NAD(P)H-dependent oxidoreductase | |||
| 7540 | biotin--[acetyl-CoA-carboxylase] ligase | |||
| 7545 | M | M.FnuSP4ORF6180P (99% identity) | GCATC | M.FnuFn1ORF7545P |
| 7550 | ArsB/NhaD family transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7600 | ATP-dependent chaperone ClpB | |||
| 7605 | R | Fnu3036McrCP (97% identity) | FnuFn1McrC2P | |
| 7610 | R | Fnu1001McrBP (70% identity) | FnuFn1McrB2P | |
| 7615 | 238 aa hypothetical protein | |||
| 7900 | RidA family protein | |||
| 7905 | R | Fnu1330ORF1185P (98% identity) | FnuFn1ORF7905P | |
| 7910 | 95 aa hypothetical protein | |||