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Putative Helicobacter pylori H390d RM systems
Ref: Chen,Z. et al. unpublished
REBASE ref # 36052
Complete sequence: 1,591,405 bp
GenBank #: CP116234
REBASE acronym: HpyH390d
Org_num: 64573
All begin PHA49_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
4275 | outer membrane beta-barrel protein HofF | |||
4280 | S | S.HpyH390rORF4300P (100% identity) | S.HpyH390dORF4280P | |
4285 | heavy metal translocating P-type ATPase | |||
4560 | hydroxyethylthiazole kinase | |||
4565 | R | HpyH390rORF4595P (100% identity) | HpyH390dORF4575P | |
4570 | S | S.HpyH390rORF4595P (100% identity) | S.HpyH390dORF4575P | |
??? | M | M.HpyH390rORF4595P (79% identity) | M.HpyH390dORF4575P | |
4590 | COG2958 family protein | |||
4855 | 44 aa hypothetical protein | |||
4860 | R | HpyH390rORF4875P (72% identity) | CACNNNNNTC | HpyH390dORF4865P |
4865 | M | M.HpyH390rORF4875P (100% identity) | CACNNNNNTC | M.HpyH390dORF4865P |
4870 | S | S.HpyH390rORF4875P (100% identity) | CACNNNNNTC | S.HpyH390dORF4865P |
4880 | RNA degradosome polyphosphate kinase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
50 | 714 aa hypothetical protein | |||
??? | RM | HpyH390rORF60P (100% identity) | HpyH390dORF55P | |
65 | 180 aa hypothetical protein | |||
290 | ComF family protein | |||
295 | RM | HpyH390rORF300P (100% identity) | CYANNNNNNTTC | HpyH390dORF295P |
300 | S | S.HpyH390rORF300P (100% identity) | CYANNNNNNTTC | S.HpyH390dORF295P |
305 | DNA polymerase I | |||
1265 | formamidase | |||
1270 | M | M1.HpyH390rORF1285P (100% identity) | M.HpyH390dORF1270AP | |
1275 | M | M2.HpyH390rORF1285P (100% identity) | M.HpyH390dORF1270BP | |
1280 | glutamine-hydrolyzing carbamoyl-phosphate | |||
1410 | serine O-acetyltransferase | |||
1415 | R | HpyH390rORF1435P (100% identity) | CATG | HpyH390dORF1420P |
1420 | M | M.HpyH390rORF1435P (100% identity) | CATG | M.HpyH390dORF1420P |
1425 | HAD family hydrolase | |||
1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
1875 | M | M.HpyH390rORF1895P (100% identity) | GCGC | M.HpyH390dORF1875P |
1880 | 144 aa hypothetical protein | |||
2045 | Laminin subunit alpha-2 precursor | |||
2050 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyH390dORF2055P |
2055 | M | M.HpyQ59ORFOP (100% identity) | TCNNGA | M.HpyH390dORF2055P |
2060 | acetyl-CoA carboxylase biotin carboxylase | |||
2700 | ATP-dependent helicase | |||
2705 | M | M.HpyH390rORF2725P (100% identity) | GTNNAC | M.HpyH390dORF2705P |
2710 | R | HpyH390rORF2725P (100% identity) | GTNNAC | HpyH390dORF2705P |
2715 | flagellar hook protein FlgE | |||
2910 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
2915 | M | M.HpyH390rORF2940P (100% identity) | GTAC | M.HpyH390dORF2915P |
2920 | R | HpyH390rORF2940P (100% identity) | GTAC | HpyH390dORF2915P |
2925 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
3755 | outer membrane protein | |||
3760 | RM | HpyH390rORF3785P (100% identity) | HpyH390dORF3760P | |
3765 | (Fe-S)-binding protein | |||
4740 | catalase | |||
4745 | R | HpyH390rORF4770P (100% identity) | ACGT | HpyH390dORF4750P |
4750 | M | M.HpyH390rORF4770P (100% identity) | ACGT | M.HpyH390dORF4750P |
4755 | GIY-YIG nuclease family protein | |||
4750 | DNA cytosine methyltransferase | |||
4755 | R | Hpyfe97ORF5110P (100% identity) | ACNGT | HpyH390dORF4760P |
4760 | M | M.HpyH390rORF4780P (100% identity) | ACNGT | M.HpyH390dORF4760P |
4765 | translational GTPase TypA | |||
4770 | glycosyltransferase family 9 protein | |||
4775 | M | M.HpyH390rORF4795P (100% identity) | ATTAAT | M.HpyH390dORF4775P |
4780 | Hop family outer membrane protein HopJ/HopK | |||
5730 | AAA family ATPase | |||
5735 | M | M.HpyH390rORF5745P (100% identity) | CCGG | M.HpyH390dORF5735P |
5740 | R | HpyH390rORF5745P (100% identity) | CCGG | HpyH390dORF5735P |
5745 | 204 aa hypothetical protein | |||
5745 | 204 aa hypothetical protein | |||
5750 | M | M.HpyH390rORF5760P (100% identity) | TCGA | M.HpyH390dORF5750P |
5755 | exodeoxyribonuclease VII large subunit | |||
6565 | alpha-(1,2)-fucosyltransferase FutC1 | |||
6570 | M | M.HpyH390rORF6575P (100% identity) | GATC | M.HpyH390dORF6570P |
6575 | R | HpyH390rORF6575P (100% identity) | GATC | HpyH390dORF6570P |
6585 | ACP S-malonyltransferase | |||
6760 | sodium/proline symporter PutP | |||
6765 | M | M1.HpyH390rORF6770P (100% identity) | M1.HpyH390dORF6765P | |
6770 | M | M2.HpyH390rORF6770P (100% identity) | CCTC | M2.HpyH390dORF6765P |
6775 | TerC family protein | |||
6815 | DNA methyltransferase | |||
6820 | R | HpyH390rORF6830P (100% identity) | GANTC | HpyH390dORF6825P |
6825 | M | M.HpyH390rORF6830P (100% identity) | GANTC | M.HpyH390dORF6825P |
6830 | N-6 DNA methylase | |||
6825 | DNA methyltransferase | |||
??? | RM | HpyH390rORF6835P (99% identity) | HpyH390dORF6830P | |
6840 | carboxylating nicotinate-nucleotide | |||
6890 | copper response regulator transcription factor | |||
6895 | R | HpyH390rORF6900P (100% identity) | GAAGA | HpyH390dORF6900P |
6900 | M | M1.HpyH390rORF6900P (100% identity) | GAAGA | M1.HpyH390dORF6900P |
6905 | M | M2.HpyH390rORF6900P (100% identity) | GAAGA | M2.HpyH390dORF6900P |
6910 | site-specific DNA-methyltransferase | |||
7375 | 107 aa hypothetical protein | |||
7380 | R | HpyH390rORF7385P (100% identity) | TGCA | HpyH390dORF7385P |
7385 | M | M.HpyH390rORF7385P (100% identity) | TGCA | M.HpyH390dORF7385P |
7390 | 67 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
40 | M | M.HpyCA8ORF7240P (95% identity) | M.HpyH390dORF40P | |
45 | R | HpyH390rORF40P (99% identity) | HpyH390dORF40P | |
50 | 714 aa hypothetical protein | |||
625 | biotin synthase | |||
630 | R | HpyH390rORF650P (97% identity) | HpyH390dORF635P | |
635 | M | M.HpyH390rORF650P (100% identity) | M.HpyH390dORF635P | |
640 | DNA/RNA non-specific endonuclease | |||
6905 | site-specific DNA-methyltransferase | |||
??? | M | M.HpyH390rORF6910P (99% identity) | M.HpyH390dORF6910P | |
6920 | R | HpyH390rORF6910P (97% identity) | HpyH390dORF6910P | |
6925 | rod shape-determining protein MreC | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2955 | type I glutamate--ammonia ligase | |||
2960 | R | HpyH390rGmrSD2P (100% identity) | HpyH390dGmrSD2P | |
2965 | 50S ribosomal protein L9 | |||
3530 | tetratricopeptide repeat protein | |||
3535 | R | HpyH390rGmrSDP (100% identity) | HpyH390dGmrSDP | |
3540 | NAD(P)H-dependent oxidoreductase |