Escherichia coli O157:H7 RV06 |
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Putative Escherichia coli O157:H7 RV06 RM systems
Ref: Chen,C.-Y. et al. unpublished
REBASE ref # 35259
Complete sequence: 5,439,697 bp
GenBank #: CP103864
REBASE acronym: EcoRV06
Org_num: 61790
All begin NUE47_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 13085 | endoribonuclease SymE | |||
| 13090 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoRV06ORF13095P |
| 13095 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoRV06ORF13095P |
| 13100 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoRV06ORF13095P |
| 13105 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1270 | NinE family protein | |||
| 1275 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoRV06ORF1275P |
| 1280 | recombination protein NinB | |||
| 7200 | DNA-binding transcriptional regulator Fis | |||
| 7205 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoRV06ORF7205P |
| 7210 | DUF2556 family protein | |||
| 7715 | ribulose-phosphate 3-epimerase | |||
| 7720 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoRV06DamP |
| 7725 | cell division protein DamX | |||
| 12825 | transposase | |||
| 12830 | R | Ecos1613ORF26795P (100% identity) | EcoRV06ORF12830P | |
| 12835 | N-acetylneuraminic acid mutarotase | |||
| 12865 | DEAD/DEAH box helicase | |||
| 12870 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoRV06ORF12870P |
| 19715 | recombination protein NinB | |||
| 19720 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoRV06ORF19720P |
| 19725 | NinE family protein | |||
| 22620 | TrmB family transcriptional regulator | |||
| 22625 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoRV06ORF22625P | |
| 22640 | DUF1737 domain-containing protein | |||
| 23825 | DUF1367 family protein | |||
| 23830 | R | Ecos15739ORF2910P (100% identity) | EcoRV06ORF23840P | |
| 23835 | 329 aa hypothetical protein | |||
| 23840 | M | M.Ecos15739ORF2910P (100% identity) | M.EcoRV06ORF23840P | |
| 23845 | 35 aa hypothetical protein | |||
| 26955 | drug/metabolite exporter YedA | |||
| 26960 | V | V.EcosPA8DcmP (100% identity) | CCWGG | V.EcoRV06DcmP |
| 26965 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoRV06DcmP |
| 26970 | phosphohydrolase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13070 | DUF1127 domain-containing protein | |||
| 13075 | R | Ecos1613GmrSP (100% identity) | EcoRV06GmrSP | |
| 13080 | R | EcosPA8GmrSDP (55% identity) | EcoRV06GmrDP | |
| 13085 | endoribonuclease SymE | |||