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Putative Prevotella copri DSM 18205 RM systems
Ref: Cheng,A.G. et al. unpublished
REBASE ref # 35114
Complete sequence: 3,325,514 bp
GenBank #: CP102288
REBASE acronym: Pco18205
Org_num: 61845
All begin NQ544_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
6525 | 454 aa hypothetical protein | |||
6530 | R | PcoORF4773P (100% identity) | Pco18205ORF6540P | |
6535 | S | S.PcoORF4773P (100% identity) | S.Pco18205ORF6540P | |
6540 | M | M.PcoORF4773P (100% identity) | M.Pco18205ORF6540P | |
6545 | 129 aa hypothetical protein | |||
9080 | 104 aa hypothetical protein | |||
9085 | S | S1.PcoORF5694P (98% identity) | S3.Pco18205ORF9105P | |
9090 | tyrosine-type recombinase/integrase | |||
9095 | S | S2.PcoORF5694P (100% identity) | S2.Pco18205ORF9105P | |
9100 | S | S3.PcoORF5694P (100% identity) | S1.Pco18205ORF9105P | |
9105 | M | M.ScoHDD04ORF10295P (100% identity) | M.Pco18205ORF9105P | |
9110 | R | PcoORF5694P (100% identity) | Pco18205ORF9105P | |
9115 | 111 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
2325 | 47 aa hypothetical protein | |||
2330 | M | M.PcoORF4317P (100% identity) | M.Pco18205ORF2330P | |
2335 | R | PcoORF4317P (100% identity) | Pco18205ORF2330P | |
2340 | DUF5640 domain-containing protein | |||
2930 | 76 aa hypothetical protein | |||
2935 | RM | PcoORF4179P (99% identity) | Pco18205ORF2935P | |
2940 | DEAD/DEAH box helicase family protein | |||
3440 | 45 aa hypothetical protein | |||
3445 | C | C.PcoORF4066P (100% identity) | C.Pco18205ORF3450P | |
3450 | M | M2.PcoORF4066P (100% identity) | M1.Pco18205ORF3450P | |
3455 | M | M1.PcoORF4066P (100% identity) | M2.Pco18205ORF3450P | |
3460 | R | PcoORF4066P (100% identity) | Pco18205ORF3450P | |
3465 | DUF2442 domain-containing protein | |||
3700 | 152 aa hypothetical protein | |||
3705 | M | M.Pca1573ORF10315P (100% identity) | M.Pco18205ORF3705P | |
3710 | 251 aa hypothetical protein | |||
4690 | restriction endonuclease subunit M | |||
4695 | RM | PcoORF3780BP (100% identity) | Pco18205ORF4695P | |
4700 | DUF6078 family protein | |||
5715 | 146 aa hypothetical protein | |||
5720 | RM | PcoORF6612P (100% identity) | Pco18205ORF5720P | |
5725 | M | M1.PcoORF6613P (100% identity) | M2.Pco18205ORF5720P | |
5730 | M | M2.PcoORF6613P (97% identity) | M1.Pco18205ORF5720P | |
5735 | Fic family protein | |||
6580 | HNH endonuclease | |||
6585 | R | PcoORF4762P (100% identity) | Pco18205ORF6590P | |
6590 | M | M.PcoORF4762P (100% identity) | M.Pco18205ORF6590P | |
6595 | YkvA family protein | |||
7205 | PDDEXK nuclease domain-containing protein | |||
7210 | V | V.ScoHDB01ORF7470P (100% identity) | V.Pco18205ORF7250P | |
7215 | helix-turn-helix domain-containing protein | |||
7220 | type II toxin-antitoxin system HigB family | |||
7225 | AAA family ATPase | |||
7230 | 40 aa hypothetical protein | |||
7235 | restriction endonuclease | |||
7240 | R | PcoORFCP (48% identity) | Pco18205ORF7250P | |
7245 | 183 aa hypothetical protein | |||
7250 | M | M.PcoORFBP (100% identity) | M.Pco18205ORF7250P | |
7255 | DEAD/DEAH box helicase family protein | |||
8180 | DNA-binding protein | |||
8185 | R | PcoORF4391P (100% identity) | Pco18205ORF8200P | |
8190 | 144 aa hypothetical protein | |||
8195 | phospholipase D family protein | |||
8200 | M | M.PcoORF4391P (100% identity) | M.Pco18205ORF8200P | |
8205 | site-specific DNA-methyltransferase | |||
8585 | GIY-YIG nuclease family protein | |||
8590 | RM | PcoI (100% identity) | GAACNNNNNNTCC | Pco18205ORF8590P |
8595 | Rpn family recombination-promoting | |||
9170 | helix-turn-helix transcriptional regulator | |||
9175 | R | PcoORF6850P (100% identity) | Pco18205ORF9180P | |
9180 | M | M.PcoORF6850P (100% identity) | M.Pco18205ORF9180P | |
9185 | C | C.PcoORF6850P (100% identity) | C.Pco18205ORF9180P | |
9190 | IS982 family transposase | |||
9645 | transposase | |||
9650 | M | M.PcoORF6737P (100% identity) | M.Pco18205ORF9650P | |
9655 | R | PcoORF6737P (100% identity) | Pco18205ORF9650P | |
9660 | DUF4143 domain-containing protein | |||
9720 | 172 aa hypothetical protein | |||
9725 | R | PcoORF314P (100% identity) | Pco18205ORF9725P | |
9730 | 266 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
2015 | SNF2-related protein | |||
2020 | M | M.PcoORF3677P (100% identity) | M.Pco18205ORF2020P | |
2025 | R | PcoORF3677P (100% identity) | Pco18205ORF2020P | |
2030 | DUF86 domain-containing protein | |||
4270 | ATP-binding protein | |||
4275 | R | PcoORF3884P (100% identity) | Pco18205ORF4280P | |
4280 | M | M.PcoORF3884P (100% identity) | M.Pco18205ORF4280P | |
4285 | 70 aa hypothetical protein | |||
6770 | 44 aa hypothetical protein | |||
6775 | M | M.PcoORF4722P (100% identity) | M.Pco18205ORF6775P | |
6780 | R | PcoORF4722P (100% identity) | Pco18205ORF6775P | |
6785 | helicase-related protein | |||
8200 | DNA adenine methylase | |||
8205 | M | M.PcoORF4390P (100% identity) | M.Pco18205ORF8205P | |
8210 | 275 aa hypothetical protein | |||
8280 | 63 aa hypothetical protein | |||
8290 | R | PcoORF4371P (100% identity) | Pco18205ORF8295P | |
8295 | M | M.PcoORF4371P (100% identity) | M.Pco18205ORF8295P | |
8300 | 393 aa hypothetical protein | |||
8785 | 71 aa hypothetical protein | |||
8790 | R | PcoORF5622P (100% identity) | Pco18205ORF8795P | |
8795 | M | M.PcoORF5622P (97% identity) | M.Pco18205ORF8795P | |
8800 | 93 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2775 | PDDEXK nuclease domain-containing protein | |||
2780 | R | Pca1573McrBP (90% identity) | Pco18205McrB4P | |
2785 | R | Pca1573McrCP (100% identity) | Pco18205McrC4P | |
2790 | excinuclease ABC subunit UvrA | |||
4725 | R | PcoMcrBP (100% identity) | Pco18205McrB3P | |
4730 | R | PcoMcrCP (100% identity) | Pco18205McrC3P | |
4735 | 55 aa hypothetical protein | |||
6505 | 155 aa hypothetical protein | |||
6510 | R | PcoMcrB3P (100% identity) | Pco18205McrB2P | |
6515 | R | PcoMcrC3P (100% identity) | Pco18205McrC2P | |
6520 | transposase |