Shewanella xiamenensis HD6416 |
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Putative Shewanella xiamenensis HD6416 RM systems
Ref: Du,H. and Wen,Y. unpublished
REBASE ref # 35310
Complete sequence: 4,834,681 bp
GenBank #: CP079718
REBASE acronym: Sxi6416
Org_num: 62026
All begin KXJ80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5540 | transcription factor | |||
| 5545 | M | M.CfrNIH4ORF24355P (99% identity) | CRAAYNNNNNNTCNNC | M.Sxi6416ORF5545P |
| 5550 | S | S.Cfr942ORF23875P (100% identity) | CRAAYNNNNNNTCNNC | S.Sxi6416ORF5545P |
| 5555 | AAA family ATPase | |||
| 5560 | DNA binding domain-containing protein | |||
| 5565 | R | CfrNIH4ORF24355P (99% identity) | CRAAYNNNNNNTCNNC | Sxi6416ORF5545P |
| 5570 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2275 | transcriptional antiterminator | |||
| 2280 | M | M.SspWE21ORF7565P (94% identity) | M.Sxi6416ORF2280P | |
| 2285 | ATP-binding protein | |||
| 3560 | AAA family ATPase | |||
| 3565 | M | M.SxiVS2DamP (100% identity) | GATC | M.Sxi6416DamP |
| 3570 | DUF2970 domain-containing protein | |||
| 6110 | 84 aa hypothetical protein | |||
| 6115 | M | M.SspLC6ORF9245P (98% identity) | M.Sxi6416ORF6115P | |
| 6120 | 115 aa hypothetical protein | |||
| 6225 | 130 aa hypothetical protein | |||
| 6230 | M | M.Sxi6416ORF10300P (84% identity) | M.Sxi6416ORF6230P | |
| 6235 | tyrosine-type recombinase/integrase | |||
| 10170 | 257 aa hypothetical protein | |||
| 10175 | M | M.SdesORFCP (96% identity) | M1.Sxi6416ORF10175P | |
| 10180 | M | M.SdesORFBP (96% identity) | M2.Sxi6416ORF10175P | |
| 10185 | 131 aa hypothetical protein | |||
| 10295 | 128 aa hypothetical protein | |||
| 10300 | M | M.EsaSS172ORFAP (89% identity) | M.Sxi6416ORF10300P | |
| 10305 | 172 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11960 | DUF2130 domain-containing protein | |||
| 11965 | M | M.Val1831ORF10830P (83% identity) | M.Sxi6416ORF11965P | |
| 11970 | R | Sxi8M34ORFDP (98% identity) | Sxi6416ORF11965P | |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11935 | 200 aa hypothetical protein | |||
| 11940 | R | Sxi8M34ORFEP (99% identity) | Sxi6416ORF11940P | |
| 11945 | DEAD/DEAH box helicase family protein | |||
| 17220 | class I SAM-dependent methyltransferase | |||
| 17225 | R | Sxi8M34ORFBP (99% identity) | Sxi6416ORF17225P | |
| 17230 | heavy-metal-associated domain-containing | |||