Escherichia coli O25b:H4-ST131 5392 |
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Putative Escherichia coli O25b:H4-ST131 5392 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 4,793,007 bp | CP103465 |
| plasmid pMB9877_1: | 122,603 bp | CP103466 |
REBASE acronym: Eco5392
Org_num: 61561
All begin M5T42_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17685 | type IV toxin-antitoxin system AbiEi family | |||
| 17690 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco5392ORF17695P |
| 17695 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco5392ORF17695P |
| 17700 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco5392ORF17695P |
| 17705 | ash family protein | |||
| plasmid pMB9877_1 | ||||
| 23825 | type II toxin-antitoxin system Phd/YefM family | |||
| 23830 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.Eco5392ORF23830P |
| 23835 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.Eco5392ORF23830P |
| 23840 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | Eco5392ORF23830P |
| 23845 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1710 | cell division protein DamX | |||
| 1715 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco5392DamP |
| 1720 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco5392ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9685 | phosphohydrolase | |||
| 9690 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco5392DcmP |
| 9695 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco5392DcmP |
| 9700 | drug/metabolite exporter YedA | |||
| 19910 | 166 aa hypothetical protein | |||
| 19915 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.Eco5392ORF19915P |
| 19920 | R | EcoS0575ORF20490P (87% identity) | RCCGGY | Eco5392ORF19915P |
| 19925 | IS1 family transposase | |||
| 19935 | response regulator receiver domain | |||
| 19940 | R | Ecos19ORF20635P (100% identity) | Eco5392ORF19940P | |
| 19945 | 97 aa hypothetical protein | |||
| plasmid pMB9877_1 | ||||
| 23190 | 103 aa hypothetical protein | |||
| 23195 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco5392ORF23195P |
| 23200 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19615 | glycosyltransferase | |||
| 19620 | R | EcosS3McrBP (100% identity) | Eco5392McrBP | |
| 19625 | R | EcosS9McrCP (100% identity) | Eco5392McrCP | |
| 19630 | Alw26I/Eco31I/Esp3I family type II restriction | |||