Escherichia coli 4238 |
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Putative Escherichia coli 4238 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 4,828,093 bp | CP103533 |
| plasmid pMB9108_2: | 94,558 bp | CP103535 |
| plasmid pMB9108_3: | 54,676 bp | CP103536 |
REBASE acronym: Eco4238
Org_num: 61525
All begin M5T38_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1980 | cell division protein DamX | |||
| 1985 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4238DamP |
| 1990 | ribulose-phosphate 3-epimerase | |||
| 2605 | DUF2556 family protein | |||
| 2610 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco4238ORF2610P |
| 2615 | DNA-binding transcriptional regulator Fis | |||
| 6165 | Com family DNA-binding transcriptional | |||
| 6170 | M | M.SenYU39ORF1896P (100% identity) | M.Eco4238ORF6170P | |
| 6175 | ribosome-associated translation inhibitor RaiA | |||
| 9445 | phosphohydrolase | |||
| 9450 | M | M.EcosPA11DcmP (99% identity) | CCWGG | M.Eco4238DcmP |
| 9455 | V | V.EcosPA11DcmP (100% identity) | V.Eco4238DcmP | |
| 9460 | drug/metabolite exporter YedA | |||
| plasmid pMB9108_2 | ||||
| 24380 | 103 aa hypothetical protein | |||
| 24385 | M | M.EcoC9777ORF4731P (100% identity) | M.Eco4238ORF24385P | |
| 24390 | 73 aa hypothetical protein | |||
| plasmid pMB9108_3 | ||||
| 24745 | EAL domain-containing protein | |||
| 24750 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco4238ORF24755P |
| 24755 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco4238ORF24755P |
| 24760 | IS1 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13365 | isocitrate/isopropylmalate family dehydrogenase | |||
| 13370 | R | EmaE2C08McrCP (100% identity) | Eco4238McrCP | |
| 13375 | R | EcoteDMcrBP (100% identity) | Eco4238McrBP | |
| 13380 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14925 | replication endonuclease | |||
| 14930 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco4238ORF14930P |
| 14935 | TraR/DksA family transcriptional regulator | |||