Escherichia coli O25b:H4-ST131 4224 |
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Putative Escherichia coli O25b:H4-ST131 4224 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 5,093,976 bp | CP103592 |
| plasmid pMB7542_1: | 138,020 bp | CP103593 |
| plasmid pMB7542_2: | 94,615 bp | CP103594 |
REBASE acronym: Eco4224
Org_num: 61558
All begin M5S53_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19245 | type IV toxin-antitoxin system AbiEi family | |||
| 19250 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco4224ORF19255P |
| 19255 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco4224ORF19255P |
| 19260 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco4224ORF19255P |
| 19265 | ash family protein | |||
| 21065 | restriction endonuclease | |||
| 21070 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco4224ORF21070P |
| 21075 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco4224ORF21070P |
| 21080 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco4224ORF21070P |
| 21085 | endoribonuclease SymE | |||
| plasmid pMB7542_1 | ||||
| 25690 | IS1-like element IS1A family transposase | |||
| 25695 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | Eco4224ORF25705P |
| 25700 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Eco4224ORF25705P |
| 25705 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.Eco4224ORF25705P |
| 25710 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1695 | cell division protein DamX | |||
| 1700 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4224DamP |
| 1705 | ribulose-phosphate 3-epimerase | |||
| 2305 | DUF2556 family protein | |||
| 2310 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco4224ORF2310P |
| 2315 | DNA-binding transcriptional regulator Fis | |||
| 8115 | PerC family transcriptional regulator | |||
| 8120 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.Eco4224ORF8120P |
| 8125 | LexA family transcriptional regulator | |||
| 8150 | 67 aa hypothetical protein | |||
| 8155 | M | M.Sso63633ORF22290P (100% identity) | M.Eco4224ORF8155P | |
| 8160 | phage lysis protein EssD | |||
| 9730 | phosphohydrolase | |||
| 9735 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco4224DcmP |
| 9740 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco4224DcmP |
| 9745 | drug/metabolite exporter YedA | |||
| 13300 | DUF3927 family protein | |||
| 13315 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco4224ORF13315P |
| 13320 | TrmB family transcriptional regulator | |||
| 15545 | replication endonuclease | |||
| 15550 | M | M.Eco5074ORF6670P (100% identity) | GATC | M.Eco4224ORF15550P |
| 15555 | TraR/DksA family transcriptional regulator | |||
| 15785 | helix-turn-helix domain-containing protein | |||
| 15790 | M | M.KpnYN1ORFGP (89% identity) | M.Eco4224ORF15790P | |
| 15795 | 71 aa hypothetical protein | |||
| 16450 | replication endonuclease | |||
| 16455 | M | M.Eco5074ORF6670P (100% identity) | GATC | M.Eco4224ORF16455P |
| 16460 | TraR/DksA family transcriptional regulator | |||
| plasmid pMB7542_1 | ||||
| 25070 | 103 aa hypothetical protein | |||
| 25075 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco4224ORF25075P |
| 25080 | 73 aa hypothetical protein | |||
| plasmid pMB7542_2 | ||||
| 26250 | 103 aa hypothetical protein | |||
| 26255 | M | M.Sso866ORF27155P (100% identity) | M.Eco4224ORF26255P | |
| 26260 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21060 | BrnT family toxin | |||
| 21065 | R | Ecou021MrrP (100% identity) | Eco4224MrrP | |
| 21070 | type I restriction-modification system subunit | |||
| 21405 | glycosyltransferase | |||
| 21410 | R | EcosS3McrBP (100% identity) | Eco4224McrBP | |
| 21415 | R | EcosS9McrCP (100% identity) | Eco4224McrCP | |
| 21420 | Alw26I/Eco31I/Esp3I family type II restriction | |||